| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,575,840 – 13,575,935 |
| Length | 95 |
| Max. P | 0.844796 |
| Location | 13,575,840 – 13,575,935 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 96.38 |
| Mean single sequence MFE | -14.40 |
| Consensus MFE | -13.50 |
| Energy contribution | -13.74 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.844796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13575840 95 - 27905053 CAUACAAAUAUAUAUGUAUAUUUAUUAAUAGUUGUGUGUGUACGAACAGCAAGUUUUUGGAAACGAACAAAUAAAUAGACAAUUCGAAAAGACAA ..............(((.((((((((....(((((.((....)).))))).....((((....))))..)))))))).))).............. ( -15.50) >DroSec_CAF1 17571 93 - 1 CAUACAAAUA--UAUGUAUAUUUAUUAAUAGUUGUGUGUGUACGAAUAGCAAGUUUUUGGAAACGAACAAAUAAAUAGACAAUUCGAAAAGACAA ..........--..(((.((((((((....(((((.((....)).))))).....((((....))))..)))))))).))).............. ( -13.60) >DroSim_CAF1 16884 93 - 1 CAUACAAAUA--UAUGUAUAUUUAUUAAUAGUUGUGUGUGUACGAACAGCAAGUUUUUGGAAACGAACAAAUAAAUAGACAAUUCGAAAAGACAA ..........--..(((.((((((((....(((((.((....)).))))).....((((....))))..)))))))).))).............. ( -15.50) >DroEre_CAF1 16195 93 - 1 CAUACGAAUA--UAUGUAAAUUUAUUAAUAGUUGUGUGUGUACGAACAGCAAGUUUUUGAAAACGAACAAAUAAAUAGACAAUUCCAAAAGACAA .....((((.--..(((..(((((((....(((((.((....)).)))))..((((.(....).)))).)))))))..))))))).......... ( -13.20) >DroYak_CAF1 16328 93 - 1 CAUGCAAAUA--UAUGUAAAUUUAUUAAUAGUUGUGUGUGUACGAACAGCAAGUUUUUGGAAACGAACAAAUAAAUAGACAAUUCGAAAAGACAA ..........--..(((..(((((((....(((((.((....)).))))).....((((....))))..)))))))..))).............. ( -14.20) >consensus CAUACAAAUA__UAUGUAUAUUUAUUAAUAGUUGUGUGUGUACGAACAGCAAGUUUUUGGAAACGAACAAAUAAAUAGACAAUUCGAAAAGACAA ..............(((.((((((((....(((((.((....)).))))).....((((....))))..)))))))).))).............. (-13.50 = -13.74 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:30 2006