| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,575,185 – 13,575,282 |
| Length | 97 |
| Max. P | 0.531569 |
| Location | 13,575,185 – 13,575,282 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 87.40 |
| Mean single sequence MFE | -26.95 |
| Consensus MFE | -17.52 |
| Energy contribution | -18.53 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531569 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13575185 97 - 27905053 AGAGUGGGGGGCGGCACUUGAGGAGACUCAU----------UGGAAUGGUUGGCCCAACUGGGCCAGAAAACAACUUGACGAGGCAAAUAAAGGAAGCCGAAAUAAA ...((.(((.....((..((((....)))).----------))...((.(((((((....)))))))....)).))).))..(((...........)))........ ( -28.10) >DroSec_CAF1 16906 94 - 1 AGAGUGG---GCGGCACUUGAGGAGACUCAU----------UGCAGCGGUUGGCCCAACUUGGCCAGAAAACAACUUGACGAGGCAAACAAAGGAAGCCAAAAUAAA .((((.(---((.(((..((((....)))).----------))).))..((((((......))))))....).)))).....(((...........)))........ ( -28.10) >DroSim_CAF1 16206 94 - 1 AGAGUGG---GCGGCACUUGAGGAGACUCAU----------UGGAGCGGUUGGCCCAACUUGGCCAGAAAACAACUUGACGAGGCAAACAAAGGAAGCCGAAAUAAA .((((.(---((.((.((((((....)))).----------.)).)).))(((((......))))).....).)))).....(((...........)))........ ( -25.30) >DroEre_CAF1 15525 104 - 1 AGAGUGG---GCGGCACUUGUGGAGGCUCAUUGGAGCUCAUUGGAGCAGUCGACCCAACUGGGCCAGAAAACAACUUGACGACGCAAACAAAGGAAGCCGAAAUAAA .......---.((((.((.(((..(((((....)))))))).)).((.((((.(((....))).(((........))).))))))...........))))....... ( -26.30) >consensus AGAGUGG___GCGGCACUUGAGGAGACUCAU__________UGGAGCGGUUGGCCCAACUGGGCCAGAAAACAACUUGACGAGGCAAACAAAGGAAGCCGAAAUAAA ...........((((...((((....))))...................((((((......)))))).............................))))....... (-17.52 = -18.53 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:29 2006