Locus 5175

Sequence ID 3R_DroMel_CAF1
Location 13,573,135 – 13,573,237
Length 102
Max. P 0.688587
window8454

overview

Window 4

Location 13,573,135 – 13,573,237
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.41
Mean single sequence MFE -26.60
Consensus MFE -17.70
Energy contribution -17.42
Covariance contribution -0.28
Combinations/Pair 1.23
Mean z-score -2.04
Structure conservation index 0.67
SVM decision value 0.32
SVM RNA-class probability 0.688587
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13573135 102 + 27905053
CCUGA-AAUGGAUCUCUGUAAGGAACCUAUCGGUCA--------------GCCGAAAGAGUUCCGAACUAAUAAACGUUAAGUUCAACCAAGAGACAGUUUUAUUAUAC---CGAAAAUG
..(((-(((...(((((....(((((((.((((...--------------.)))).)).)))))((((((((....))).))))).....)))))..))))))......---........ ( -27.40)
>DroSec_CAF1 15003 102 + 1
CCUGG-AAUGGAUCUCUGUAAGGAACCUAUCGGCCA--------------GCCGAAAGAGUUCCGAACUAAUAAACUUUAAGUUCAACCCAGAGGCAGUUUUAUUAUAC---CGGAAAUG
.((((-((((((((((((...(((((((.((((...--------------.)))).)).)))))(((((((......)).)))))....))))))....))))))...)---)))..... ( -30.40)
>DroSim_CAF1 14151 102 + 1
CCUGG-AAUGGAUCUCUGUAAGGAACCUAUCGGCCA--------------GCCGAAAGAGUUCCGAACUAAUAAACUUUAAGUUCAACCCAGAGGCAGUUUUAUUAUAC---CGGAAAUG
.((((-((((((((((((...(((((((.((((...--------------.)))).)).)))))(((((((......)).)))))....))))))....))))))...)---)))..... ( -30.40)
>DroEre_CAF1 13662 101 + 1
CCUGG-AAUGGAUCUCUGUA-GGAACCUGUCGGCCA--------------GCCGAAAGAGUUCCUGACUAAUAAACCCUAAGUUCAACCAAGAGGCAGUUUUAUUAUAU---CCGAAAAA
..(((-((((((...(((((-(((((((.((((...--------------.)))).)).)))))).................(((......))))))).)))))....)---)))..... ( -23.20)
>DroYak_CAF1 13617 102 + 1
CCUGG-AAUGGAUCUCUGUAAGGAACCUAUCGGCCA--------------GCCGAAAGAGUUCCUAACUAAUAAACUUUAAGUUCAACCAAGAGGCAGUUUUAUUACAC---CCAAAAAG
..(((-((((((...((((.((((((((.((((...--------------.)))).)).))))))..........((((..(.....)..)))))))).))))))....---)))..... ( -23.60)
>DroAna_CAF1 12092 117 + 1
CUUGUAAAAGGAUCUCUGCAAGG-ACCUAUCGGCCAUCCUUGGACCAUCGGCCGAAAGAGUUCUCA--UAAUAAACUUUAAGUUCAACUCGACGAAUAUUUUAUUAUUAUGAAGGAAAAG
((((((..........)))))).-.(((.((((((.((....)).....))))))........(((--((((((.......((((........))))......))))))))))))..... ( -24.62)
>consensus
CCUGG_AAUGGAUCUCUGUAAGGAACCUAUCGGCCA______________GCCGAAAGAGUUCCGAACUAAUAAACUUUAAGUUCAACCAAGAGGCAGUUUUAUUAUAC___CGGAAAAG
((.......)).(((((....(((((((.(((((................))))).)).))))).........(((.....)))......)))))......................... (-17.70 = -17.42 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:22 2006