Locus 5174

Sequence ID 3R_DroMel_CAF1
Location 13,572,756 – 13,572,848
Length 92
Max. P 0.836338
window8453

overview

Window 3

Location 13,572,756 – 13,572,848
Length 92
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 77.11
Mean single sequence MFE -38.68
Consensus MFE -17.01
Energy contribution -16.77
Covariance contribution -0.24
Combinations/Pair 1.32
Mean z-score -2.08
Structure conservation index 0.44
SVM decision value 0.73
SVM RNA-class probability 0.836338
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13572756 92 - 27905053
GAAUGGACUGGACAGUGGACAGUGGACACUGGACAGUGGACA--------------GUGGACGCUGGACA----------CACAGUGUACCGUGCCUGCGGGGCUAGGCCGAGCUU
...((.((((....(((..(((((..(((((..(...)..))--------------)))..)))))..))----------).)))).)).((.((((((...)).))))))..... ( -37.00)
>DroSec_CAF1 14662 92 - 1
GAAUGGACUGGACACUGGGCACUGGACACCGGACAGUGGACA--------------GUGGACGCUGGACA----------CACAGUGUACCGUGCCUGCGGGGCUAGGCCGAGCUU
...(((.((((.(((((..(((((..(...)..)))))..))--------------))).((((((....----------..)))))).((((....))))..)))).)))..... ( -36.00)
>DroSim_CAF1 13760 106 - 1
GAAUGGACUGGACAGUGGACACUGGACACCGAACAGUGGACAGUGGACACUGGACAGUGGACGCUGGACA----------CACAGUGUACCGUGCCUGCGGGGCUAGGCCGAGCUU
....((((((..(((((..(((((..(((......)))..)))))..)))))..))))((((((((....----------..)))))).))...)).((..(((...)))..)).. ( -49.40)
>DroEre_CAF1 13289 95 - 1
GAACGGACUGGACACUGGACAGUGGACACUGG-------ACA--------------GUGGACACUGGACAGUGGAUGCUGGACAGUGGUUGCUGCCUGCGGGGUUAGGCCGGACUU
...(((.((((.(((((..(((((..((((..-------..)--------------)))..)))))..)))))..(((.((.((((....)))))).)))...)))).)))..... ( -42.30)
>DroYak_CAF1 13244 85 - 1
GAUUGGACUGGACAGUGGACACCAGAAACUGG-------ACA--------------GUGGACGCUGGACA----------CACAGUGUACCAUGCCUGCGGGGUUAGGCCGGGCUU
......((((..((((...........)))).-------.))--------------))((((((((....----------..)))))).))..((((((........).))))).. ( -28.70)
>consensus
GAAUGGACUGGACAGUGGACACUGGACACUGGACAGUGGACA______________GUGGACGCUGGACA__________CACAGUGUACCGUGCCUGCGGGGCUAGGCCGAGCUU
...(((.((((...((((.((((((...)))...........................((((((((................)))))).))))).))))....)))).)))..... (-17.01 = -16.77 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:21 2006