Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,571,275 – 13,571,372 |
Length | 97 |
Max. P | 0.549139 |
Location | 13,571,275 – 13,571,372 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 82.10 |
Mean single sequence MFE | -24.70 |
Consensus MFE | -13.73 |
Energy contribution | -15.98 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.05 |
Mean z-score | -2.25 |
Structure conservation index | 0.56 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13571275 97 + 27905053 ACACCAUC---AUGGCUCCCAUGGCCAGCAGAGCCAUCACAAUCAUCACCAUCGCAUGCCGAUGCGAGUUUCGACCACGAAACGUGAUAGC---AAGACCGCC ......((---.(((((.....)))))...))((.(((((...........((((((....))))))((((((....))))))))))).))---......... ( -28.70) >DroPse_CAF1 27611 97 + 1 CCAUCAUCAUCAUCACAGCCAUA---AUCACGGCCAGCACAACCC---CCACAGGAUGCCGAUGCGAGUUUCGACCACGAAACGUGAUAGCACAAAGACCGCC ...........(((...(((...---.....)))..(((...((.---.....)).))).)))(((.((((((....))))))(((....)))......))). ( -18.60) >DroSec_CAF1 13197 97 + 1 ACACCAUC---AUGGCUCCCAUGGCCAGCAGAGCCAUCACAAUCCUCACCAUCGCAUGCCGAUGCGAGUUUCGACCACGAAACGUGAUAGC---AAGACCGCC ......((---.(((((.....)))))...))((.(((((...........((((((....))))))((((((....))))))))))).))---......... ( -28.70) >DroSim_CAF1 12299 97 + 1 ACACCAUC---AUGGCUCCCAUGGCCAGCAGAGCCAUCACAAUCCUCACCAUCGCAUGCCGAUGCGAGUUUCGACCACGAAACGUGAUAGC---AAGACCGCC ......((---.(((((.....)))))...))((.(((((...........((((((....))))))((((((....))))))))))).))---......... ( -28.70) >DroYak_CAF1 11753 97 + 1 ACACCACA---UUGGCUCCCAGAGCCAUCACACCCAUCCCAACCAUCACCACCGCAUACCAAUGCGAGUUUCGACCACGAAACGUGAUAGC---AAGACCGCC ........---..(((((...)))))(((((.....................(((((....))))).((((((....))))))))))).((---......)). ( -24.90) >DroPer_CAF1 28784 97 + 1 CCAUCAUCAUCAUCACAGCCAUA---AUCACGGCCAGCACAACCC---CCACAGGAUGCCGAUGCGAGUUUCGACCACGAAACGUGAUAGCACAAAGACCGCC ...........(((...(((...---.....)))..(((...((.---.....)).))).)))(((.((((((....))))))(((....)))......))). ( -18.60) >consensus ACACCAUC___AUGGCUCCCAUAGCCAGCACAGCCAUCACAACCCUCACCACCGCAUGCCGAUGCGAGUUUCGACCACGAAACGUGAUAGC___AAGACCGCC ............(((((.....))))).....((.(((((.............((((....))))..((((((....))))))))))).))............ (-13.73 = -15.98 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:20 2006