Locus 5172

Sequence ID 3R_DroMel_CAF1
Location 13,569,319 – 13,569,430
Length 111
Max. P 0.970741
window8451

overview

Window 1

Location 13,569,319 – 13,569,430
Length 111
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 64.08
Mean single sequence MFE -24.67
Consensus MFE -13.97
Energy contribution -14.20
Covariance contribution 0.23
Combinations/Pair 1.17
Mean z-score -1.61
Structure conservation index 0.57
SVM decision value 1.66
SVM RNA-class probability 0.970741
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13569319 111 - 27905053
UAAAAAAAAUGGGCAAAUUGUCACAUACAUCCACUGUAGGUGGCAAGAUUCAGCUUCUUCCAGUUCAUACUGGGUUAUUGUACCCACUAUUCUUAGAAUACUAGGU---------UCACU
.........((((....(((((((.((((.....)))).)))))))......((....((((((....)))))).....)).)))).....(((((....))))).---------..... ( -25.90)
>DroSim_CAF1 10382 105 - 1
UAAC--AAAUGGGCAAAUUGUCACAUACCUCCACUGUAGGUGGCAAAAUUCAGC-----------CAUACUUGCUGUUUAAACCCAUUACUCUUAGAGUAAAAGGUAUACUAAGAUCG--
....--.((((((....(((((((.(((.......))).)))))))....((((-----------.......))))......))))))..((((((.(((.....))).))))))...-- ( -25.20)
>DroYak_CAF1 9591 107 - 1
UAAC--AAAUGGGUAAAAUGUCACACACAACGACUGUGGUUGGCAAGCUUCG-C--------GUCACUUCGGUCUUUUUAUACCCAUUACUCGUAGAAUUAAACCCCU--UAGAAGCGGU
....--.((((((((...(((((..((((.....))))..))))).......-.--------...((....)).......))))))))..............(((.((--....)).))) ( -22.90)
>consensus
UAAC__AAAUGGGCAAAUUGUCACAUACAUCCACUGUAGGUGGCAAGAUUCAGC________GU_CAUACUGGCUUUUUAUACCCAUUACUCUUAGAAUAAAAGGU_U__UA__AUCG_U
.......((((((.....((((((.((((.....)))).))))))....................((....)).........))))))................................ (-13.97 = -14.20 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:19 2006