| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,568,575 – 13,568,682 |
| Length | 107 |
| Max. P | 0.720163 |
| Location | 13,568,575 – 13,568,682 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 96.88 |
| Mean single sequence MFE | -24.00 |
| Consensus MFE | -22.77 |
| Energy contribution | -23.10 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.720163 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13568575 107 + 27905053 AAAAAAGUUUGCAAAUGCAGCGGUUGCAACAACUGUUUGUUUUACUCACAAUCUGUUAUUUGUUAUUGCCUAAUGAAUACUAAACUGAUUGUGUUUGCUUGCUAUUU .....(((..(((((.((((((((((...)))))).))))......(((((((.((((((..(((.....)))..))))....)).))))))))))))..))).... ( -25.90) >DroSec_CAF1 10534 107 + 1 AAAAAAGUUUGCAAAUGCAGCGGUUGCAACAACUGUUUGUUUAACUCACAAUCUGCUAUUUGUUAUUGCCUAAUGAAUACUAAACUAAUUGUGUUUGCUUGCUAGUC .....(((..((((((((((((((((...)))))))....................((((..(((.....)))..))))..........)))))))))..))).... ( -21.90) >DroSim_CAF1 9675 107 + 1 AAAAAAGUUUGCAAAUGCAGCGGUUGCAACAACUGUUUGUUUUACUCACAAUCUGCUAUUUGUUAUUGCCUAAUGAAUACUAAACUGAUUGUGUUUGCUUGCUAGUC .....(((..(((((.((((((((((...)))))).))))......(((((((...((((..(((.....)))..)))).......))))))))))))..))).... ( -24.20) >consensus AAAAAAGUUUGCAAAUGCAGCGGUUGCAACAACUGUUUGUUUUACUCACAAUCUGCUAUUUGUUAUUGCCUAAUGAAUACUAAACUGAUUGUGUUUGCUUGCUAGUC .....(((..(((((.((((((((((...)))))).))))......(((((((...((((..(((.....)))..)))).......))))))))))))..))).... (-22.77 = -23.10 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:18 2006