Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,911,763 – 1,911,866 |
Length | 103 |
Max. P | 0.986044 |
Location | 1,911,763 – 1,911,866 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 75.00 |
Mean single sequence MFE | -27.35 |
Consensus MFE | -16.16 |
Energy contribution | -19.47 |
Covariance contribution | 3.31 |
Combinations/Pair | 1.00 |
Mean z-score | -2.34 |
Structure conservation index | 0.59 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.986044 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1911763 103 - 27905053 UUAAGUGGCAGCAUAGCAGCUGAAAAAGUGGCACCGAUACUUGAAUCUUGCAUGUGCUGUGCUACACUG---AACAAAACUAGUCCAAAAUUCGUUACUUCUUUUG ..(((((((((((((((((((.....))).(((..(((......))).)))...)))))))))..((((---........)))).........)))))))...... ( -24.20) >DroSec_CAF1 70307 106 - 1 UUAAGUGGCAGCAUAGCAGCUGAAAAAGUGGCACCGAUACUUGCAUCUUGCAUGUGCUGUGCUGCACUUGGAAAAAAAACCAAUUCAAAAUGAGUUAUUGCUUUUG (((((((.((((((((((..((...(((..(((........)))..))).))..)))))))))))))))))..........(((((.....))))).......... ( -31.10) >DroSim_CAF1 71097 95 - 1 UUAAGUGGCAGCAUAGCAGCUGAAAAAGUGGCACCGAUACUUGCAUCUUGCAUGUGCUGUGCUGCACUUGGAAAAAA-----------AAUGAGUUAUUGCUUUUG (((((((.((((((((((..((...(((..(((........)))..))).))..)))))))))))))))))......-----------...((((....))))... ( -30.00) >DroEre_CAF1 72371 84 - 1 UUAAGUGGCAGCAUAGCAGCAGAAAAAAU-------------GCAUCUUGCAUGU-----GCUGCACUGGGAA---AAACCGGACUGAAAUUAAUAAUUGCUUU-G ..((((.((((((((((((((.......)-------------))....))).)))-----))))).((((...---...))))................)))).-. ( -24.10) >consensus UUAAGUGGCAGCAUAGCAGCUGAAAAAGUGGCACCGAUACUUGCAUCUUGCAUGUGCUGUGCUGCACUGGGAAAAAAAACCAGUCCAAAAUGAGUUAUUGCUUUUG .((((((.((((((((((((.((..(((((.......)))))...))..))...)))))))))))))))).................................... (-16.16 = -19.47 + 3.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:03 2006