Locus 5169

Sequence ID 3R_DroMel_CAF1
Location 13,566,719 – 13,566,836
Length 117
Max. P 0.528744
window8447

overview

Window 7

Location 13,566,719 – 13,566,836
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.67
Mean single sequence MFE -38.13
Consensus MFE -27.07
Energy contribution -26.72
Covariance contribution -0.36
Combinations/Pair 1.43
Mean z-score -1.02
Structure conservation index 0.71
SVM decision value -0.01
SVM RNA-class probability 0.528744
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13566719 117 + 27905053
C--UUUGCAGGCACUUGGCGCUUUGGCUGGAUACUGUGCGACAUUUGGAUCUCGCUGGACAUCCUGCUCUGCAGCGGCUCCAUCCUCAGCCUGUGCGCCAUCAGUCUGGACAGGUGAGU-
(--(.(.(((((...((((((...((((((.......((((.((....)).))))((((....(((((....))))).))))...))))))...))))))...))))).).))......- ( -42.30)
>DroPse_CAF1 24471 115 + 1
C----UGCAGGCACCUGGCGCUUCGGAUGGAUACUGUGCGACAUAUGGAUCUCCCUGGACAUUCUCCUCUGCACCGGCUCCAUCCUUAGCCUGUGCGCAAUCAGCCUGGACAGGUGAGU-
.----(((..((((..(((.....(((((((..(.(((((......((((.((....)).)))).....))))).)..)))))))...))).))))))).(((.(((....))))))..- ( -39.80)
>DroGri_CAF1 4723 119 + 1
UCUUAUGCAGGCUCAUGGCAACUUGGCCUGGUGCUGUGCGAUAUUUGGAUAUCCUUCGAUAUAUUGCUAUGCACGGCAUCCAUUCUUAGUUUGUGUGCCAUCAGCUUGGACAGGUAAGU-
.(((.(.((((((.(((((((((.((..(((((((((((.(((.....(((((....))))).....))))))))))).)))..)).))).....)))))).)))))).).))).....- ( -41.00)
>DroWil_CAF1 2137 116 + 1
C----CUUAGGUGUUUGGCGUUUUGGUUGGAUACUGUGUGACAUUUGGAUAUCUUUGGACAUACUACUUUCAACUGGAUCCAUUUUGAGUUUAUGUGCCAUUAGCUUGGACAGGUAAGUA
.----((((((....(((...((..((((((....(((((.((...((....)).))..)))))....))))))..)).))).))))))(((((.(((((......))).)).))))).. ( -28.40)
>DroAna_CAF1 7026 115 + 1
C----CGCAGGCACUUGGCGUUUCGGCUGGAUUCUGUGCGACAUCUGGAUCUCGCUGGACAUCCUUCUCUGCACCGGCUCCAUUCUUAGUCUCUGCGCCAUCAGUCUGGACAGGUGAGU-
(----(.(((((...((((((...(((((((..(.(((((......((((.((....)).)))).....))))).)..)))......))))...))))))...)))))....)).....- ( -35.50)
>DroPer_CAF1 25658 115 + 1
C----UGCAGGCACCUGGCGCUUCGGAUGGAUACUGUGCGACAUAUGGAUCUCCCUGGACAUUCUCCUCUGCACCGGCUCCAUCCUUAGCCUGUGCGCCAUCAGCCUGGACAGGUGAGU-
(----(((((((...((((((...(((((((..(.(((((......((((.((....)).)))).....))))).)..))))))).........))))))...)))))..)))......- ( -41.80)
>consensus
C____UGCAGGCACUUGGCGCUUCGGCUGGAUACUGUGCGACAUUUGGAUCUCCCUGGACAUACUCCUCUGCACCGGCUCCAUCCUUAGCCUGUGCGCCAUCAGCCUGGACAGGUGAGU_
.......(((((...((((((...(((((((..(.(((((......((((.((....)).)))).....))))).)..))))......)))...))))))...)))))............ (-27.07 = -26.72 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:16 2006