| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,546,270 – 13,546,383 |
| Length | 113 |
| Max. P | 0.513716 |
| Location | 13,546,270 – 13,546,383 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.90 |
| Mean single sequence MFE | -39.85 |
| Consensus MFE | -24.19 |
| Energy contribution | -27.53 |
| Covariance contribution | 3.34 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13546270 113 + 27905053 GUUUGC-------GGCAAUAUUCGGUCUGUUUAUCGCAGCAUGGACGGCACUUGCAAUAAUCCAGAACCACAGAGAUCUCUGUGGGGUGCUGCUGGUCAACCGAUGGAGCGCAUGCUGCC ....((-------((((...(((.(((.(((.(((((((((((((..((....)).....)))....(((((((....))))))).))))))).))).))).))).)))....)))))). ( -45.20) >DroVir_CAF1 11359 110 + 1 AUUUGCCUAGGUAGACACCAUU----------UUCGGAGUAUGGAUGGCACUUGUAAUAAUCCGUUACCGCAACGUUCGCAUUGGGGUGCUGCUGGCCAGCCAAUGGAGCGUCUGCUUCC ........((((((((......----------..(((...((((((.((....))....))))))..)))....((((.((((((.(.((.....)))..)))))))))))))))))).. ( -34.60) >DroSec_CAF1 21062 113 + 1 GUUUGC-------GGCAAUAUUCGUUCUAUUUAUCGCAGCAUGGAUGGCACUUGCAAUAAUCCAGAACCACAGAGAUCGCGGUGGGGUGCUGCUGGUCAACCAAUGGAGCGCAUGCUGCC ....((-------((((.....(((((((((....(((((((((((.((....))....))))....((((.(....)...)))).))))))).((....)))))))))))..)))))). ( -42.10) >DroSim_CAF1 18080 113 + 1 GUUUGC-------GGCAAUAUUCGUUCUGUUUAUCGCAGCAUGGAUGGCACUUGCAAUAAUCCAGAACCACAGAGAUCGCUGUGGGGUGCUGCUGGUCAACCGAUGGAGCGCAUGCUGCC ....((-------((((.....(((((((((....(((((((((((.((....))....))))....((((((......)))))).))))))).((....)))))))))))..)))))). ( -45.60) >DroYak_CAF1 25914 113 + 1 GUGUGC-------GGCAAUAUUCGUUCUGUUUAUCGCAGCAUUGAUGGCACAUGCAAUAAUCCGGAACCACAGAGAUCGCUGUGGGGUGCUGCUGGUCAGCCGAUGGAGCGCAUGCUGCC ....((-------((((.....(((((((((....(((((((((((.((....))....))).....((((((......)))))))))))))).((....)))))))))))..)))))). ( -42.20) >DroAna_CAF1 25296 113 + 1 AUUUGC-------CGUGACAUUCAAUCGGUAUUUCGCAGUCUGGACGGAACUUGCAACAAUCCCCUGCCCCAGCGUUCGCUAUGGGGAGCUGCUGGCCAACCGAUGGAACGACUUUUGCC ......-------(((..((.....(((((.....((((...(((..(.........)..))).)))).(((((((((.(....).)))).)))))...)))))))..)))......... ( -29.40) >consensus GUUUGC_______GGCAAUAUUCGUUCUGUUUAUCGCAGCAUGGAUGGCACUUGCAAUAAUCCAGAACCACAGAGAUCGCUGUGGGGUGCUGCUGGUCAACCGAUGGAGCGCAUGCUGCC .............((((.(((.((.(((((.....(((((((((((.((....))....))))....((((((......)))))).)))))))(((....)))))))).)).))).)))) (-24.19 = -27.53 + 3.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:04 2006