Locus 5160

Sequence ID 3R_DroMel_CAF1
Location 13,543,518 – 13,543,608
Length 90
Max. P 0.924046
window8431

overview

Window 1

Location 13,543,518 – 13,543,608
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -31.13
Consensus MFE -29.70
Energy contribution -29.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.47
Structure conservation index 0.95
SVM decision value 1.16
SVM RNA-class probability 0.924046
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13543518 90 + 27905053
CGUCGAGAGGAGAGAAACUGAAUUUUUCACUCGCCCUCGGGCGAAAGUCCGGCGGCAGAUUUGUUGUUGGGCCAAGAAGACUCAAUAUAU
.(((..(((((((((.......)))))).)))((((.(((((....)))))(((((......))))).))))......)))......... ( -31.60)
>DroSec_CAF1 18264 90 + 1
CGUCGAGAGGAGAGAAACUGAAUUUUUCACUCGCCCUCGGGCGAAAGUCCGGCGGCAGAUUUGUUGUUGGGCCAAGAAGACUCAAUAUAU
.(((..(((((((((.......)))))).)))((((.(((((....)))))(((((......))))).))))......)))......... ( -31.60)
>DroSim_CAF1 15282 90 + 1
CGUCGAGAGGAGAGAAACUGAAUUUUUCACUCGCCCUCGGGCGAAAGUCCGGCGGCAGAUUUGUUGUUGGGCCAAGAAGACUCAAUAUAU
.(((..(((((((((.......)))))).)))((((.(((((....)))))(((((......))))).))))......)))......... ( -31.60)
>DroYak_CAF1 23125 87 + 1
---CGAGAGGAGAGAAACUGAAUUUUUCACUCGCCCUCGGGCGAAAGUCCGGCGGCAGAUUUGUUGUUGGGCCAAGAAGACUCAAUAUAU
---...(((((((((.......)))))).)))(((.((((((....)))))).)))........(((((((.(.....).)))))))... ( -29.70)
>consensus
CGUCGAGAGGAGAGAAACUGAAUUUUUCACUCGCCCUCGGGCGAAAGUCCGGCGGCAGAUUUGUUGUUGGGCCAAGAAGACUCAAUAUAU
......(((((((((.......)))))).)))(((.((((((....)))))).)))........(((((((.(.....).)))))))... (-29.70 = -29.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:00 2006