Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,911,310 – 1,911,401 |
Length | 91 |
Max. P | 0.851368 |
Location | 1,911,310 – 1,911,401 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 65.59 |
Mean single sequence MFE | -19.34 |
Consensus MFE | -7.40 |
Energy contribution | -8.24 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.23 |
Mean z-score | -2.04 |
Structure conservation index | 0.38 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851368 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1911310 91 + 27905053 GCUCCGCAAAUGAAA-AGCCGGCAGAUGGAAAACCGGGCGG----UGUACUG-AGAAAAAAAGUUGAGCCAGUUAAGCG-AACUGAAAGAAUCGAAGA ((((.((........-..((((...........)))).(((----....)))-.........)).))))(((((.....-)))))............. ( -17.20) >DroSim_CAF1 70754 90 + 1 GCUCCGCAAAUGAAA-AGCCGGCAGAUGGAAAACCAGGCAG----UGUACUG-AGAAAAA-AGUGGAGCAUGUUAGGCC-AACUGAAAGAAUCGAAGA (((((((........-.(((((...........)).)))((----....)).-.......-.)))))))...((((...-..))))............ ( -19.70) >DroEre_CAF1 71976 83 + 1 GCUCCGCAGAGGCAA----CGGCAAAUGGAAAACCAGGCUG----UGCACUG-ACAAA-AAAGUGGAGCACGUUGAACG-AUUAAAA----UCGAACA (((((.(((..(((.----((((...(((....))).))))----))).)))-((...-...)))))))........((-((....)----))).... ( -26.00) >DroYak_CAF1 75794 84 + 1 GCUCCGCAAAGGCAA----UGGCAAAUGGAAAACCAGGCUG----UGCACUGAACAAA-AAAGUGGAGCUAGUUGAACC-AAUUGAA----AGAAGAA (((((((..(((((.----((((...(((....))).))))----))).)).......-...)))))))((((((...)-)))))..----....... ( -21.30) >DroAna_CAF1 57835 87 + 1 GC---GUAAAAGAAGGAAACGGCAAAA-CAGCCCCAGGCUGUAAAUGUACUC-AAAAAAAAUUCUGAA--AAAUAAAUGUAAUUAAAUUAAU-GA--- ..---.....(((((....).(((..(-(((((...))))))...)))....-........))))...--......................-..--- ( -12.50) >consensus GCUCCGCAAAGGAAA_A__CGGCAAAUGGAAAACCAGGCUG____UGUACUG_ACAAAAAAAGUGGAGCAAGUUAAACG_AAUUGAA__AAUCGAAGA (((((((.............((...........))((((.......)).))...........)))))))............................. ( -7.40 = -8.24 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:02 2006