Locus 5159

Sequence ID 3R_DroMel_CAF1
Location 13,543,093 – 13,543,199
Length 106
Max. P 0.616204
window8430

overview

Window 0

Location 13,543,093 – 13,543,199
Length 106
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 92.34
Mean single sequence MFE -22.40
Consensus MFE -17.34
Energy contribution -17.78
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.61
Structure conservation index 0.77
SVM decision value 0.17
SVM RNA-class probability 0.616204
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13543093 106 - 27905053
CAUUCCAGUGCUGUGUAAACGCGAAAAAUCGGCAUAGAAAAUAAUUACGAAAAAAUCAUUACUGUGCUGCCCGUUUCAUUC-----GUUUCACACAGAAACUAAUAAAGCG----
......(((.(((((((((((.((((...((((((((..(((.(((.......))).))).))))))))....))))...)-----)))).))))))..))).........---- ( -23.30)
>DroSec_CAF1 17836 106 - 1
CAUUCCAGUGCUGUGUAAACGCGAAAAAUCGGCAUAGAAAAUAAUUACGAAAAAAUCAUUACUGUGCUGCCCGUUUCAUUC-----GUUUCACACAGAAACUAAUAAAGCG----
......(((.(((((((((((.((((...((((((((..(((.(((.......))).))).))))))))....))))...)-----)))).))))))..))).........---- ( -23.30)
>DroSim_CAF1 14853 106 - 1
CAUUCCAGUGCUGUGUAAACGCGAAAAAUCGGCAUAGAAAAUAAUUACGAAAAAAUCAUUACUGUGCUGCCCGUUUCAUUC-----GUUUCACACAGAAACUAAUAAAGCG----
......(((.(((((((((((.((((...((((((((..(((.(((.......))).))).))))))))....))))...)-----)))).))))))..))).........---- ( -23.30)
>DroYak_CAF1 22704 106 - 1
CAUUCCAGUGCUGUGUAAACGCAAAAAAUCGGCAUAGAAAAUAAUUACGAAAAAAUCAUUACUGUGCUGCUCGUUUCAUUC-----GUUUCACACAGAAACUAAUAAAGCG----
......(((.(((((((((((....((((((((((((..(((.(((.......))).))).))))))))...))))....)-----)))).))))))..))).........---- ( -20.60)
>DroAna_CAF1 15529 113 - 1
UGUGCCAGUGCUGUGUAAACGCGAAAAUUCGGCAUAGAAAAUAAUUACGAAAAAAUCAUUACU--GCCGUCCGUUUCGUUCGUUUCGUUUCACACAGAAACUAAUAAAGCCUCUG
.....(((.(((.(((((((((((((...(((((............................)--))))....)))))..))))).(((((.....)))))..))).)))..))) ( -21.49)
>consensus
CAUUCCAGUGCUGUGUAAACGCGAAAAAUCGGCAUAGAAAAUAAUUACGAAAAAAUCAUUACUGUGCUGCCCGUUUCAUUC_____GUUUCACACAGAAACUAAUAAAGCG____
.........((((((....)))((((...((((((((..(((.(((.......))).))).))))))))....)))).........(((((.....)))))......)))..... (-17.34 = -17.78 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:59 2006