Locus 5158

Sequence ID 3R_DroMel_CAF1
Location 13,542,964 – 13,543,069
Length 105
Max. P 0.914220
window8429

overview

Window 9

Location 13,542,964 – 13,543,069
Length 105
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 90.69
Mean single sequence MFE -27.76
Consensus MFE -22.96
Energy contribution -23.32
Covariance contribution 0.36
Combinations/Pair 1.13
Mean z-score -1.76
Structure conservation index 0.83
SVM decision value 1.09
SVM RNA-class probability 0.914220
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13542964 105 + 27905053
CU------CUCUCUUUUCACAUUUGGCGGCUAUACACGCACACGCCGUAUCCCUUUCCGUCUCACUUGCACUUGCUCGCCAUCCAGGCUGAAGGCAUAUGGCGCUCUCGCU
..------................((((((.......))...((((((((.(((((...........((....))..(((.....))).))))).))))))))....)))) ( -26.80)
>DroSec_CAF1 17707 105 + 1
CU------CUCUCUUUUCACAUUUGGCGGCUAUACACGCACACGCCGUAUCCCUUUCCGUCUCACUUGCACUUGCUCGCCAGCCAGGCUGAAGGCAUACGGCGCUCUCGCU
..------................((((((.......))...((((((((.(((((..((((..((.((........)).))..)))).))))).))))))))....)))) ( -30.00)
>DroSim_CAF1 14724 105 + 1
CU------CUCUCUUUUCACAUUUGGCGGCUAUACACGCACACGCCGUAUCCCUUUCCGUCUCACUUGCACUUGCUCGCCAGCCAGGCUGAAGGCAUACGGCGCUCUCGCU
..------................((((((.......))...((((((((.(((((..((((..((.((........)).))..)))).))))).))))))))....)))) ( -30.00)
>DroYak_CAF1 22581 105 + 1
CU------CUCUCUUUUCACAUUUGGCGGCUAUACACGCACACGCCGUAUCCCUUUCCGUCUCACUUGCACUUGCUCGCCAGCCAGGCUGAAGACAUACGGCGCUCUCGCU
..------................((((((.......))...((((((((...((((.((((..((.((........)).))..)))).))))..))))))))....)))) ( -26.30)
>DroAna_CAF1 15396 111 + 1
CUCGCUGGCUCUCUUUUUACAUUUGGCGGCUACACACGCACACGCCGUAUCCAUCUCUAUCUCACUCGCACUUGCUCGAUGGCCGUGCUAGAGGCAUACGCCGCUCUCUCU
...((.(((...............((((((.......))...))))((((...((((((........((((..(((....))).)))))))))).)))))))))....... ( -25.70)
>consensus
CU______CUCUCUUUUCACAUUUGGCGGCUAUACACGCACACGCCGUAUCCCUUUCCGUCUCACUUGCACUUGCUCGCCAGCCAGGCUGAAGGCAUACGGCGCUCUCGCU
.......................(((((........))).))((((((((.(((((...........((....))..(((.....))).))))).))))))))........ (-22.96 = -23.32 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:58 2006