| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,541,735 – 13,541,849 |
| Length | 114 |
| Max. P | 0.827550 |
| Location | 13,541,735 – 13,541,849 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 85.00 |
| Mean single sequence MFE | -40.72 |
| Consensus MFE | -33.31 |
| Energy contribution | -35.19 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13541735 114 - 27905053 ACGUUAAACUCUCUGCUUCAGUCCUCGAAUCCGCCGCCUCCGCCGCAGCAUCGCUACGCCAACACCUACGAUCCCCAGCAGGCGGCCGCUUCGGCGGCAGCGGCAGCGGCGGCU ................................((((((.(.(((((..........((((....................))))(((((....))))).))))).).)))))). ( -45.25) >DroVir_CAF1 6388 111 - 1 ACCCUGAAUUCAUUACUACAAUCGUCAAAUCCGCCGCCACCACCCCAGCAUCGCUAUGCGAAUAAUUAUGAUACCCAGCAAGUUGCCAAUG---CGGCAGUGGCUGCCGCAGCC ................................((.(((((.......((.((((...)))).......((.....))))....((((....---.))))))))).))....... ( -21.00) >DroSec_CAF1 16481 114 - 1 ACGUUAAACUCUCUGCUCCAGUCCUCGAAUCCUCCGCCUCCGCCGCAGCAUCGCUACGCCAACACCUACGAUCCCCAGCAGGCGGCCGCUUCGGCGGCAGCGGCUGCUGCGGCU .........................................((((((((((((((.((((....................))))(((((....)))))))))).))))))))). ( -45.15) >DroSim_CAF1 13495 114 - 1 ACGUUAAACUCUCUGCUCCAGUCCUCGAAUCCGCCGCCUCCGCCGCAGCAUCGCUACGCCAACACCUACGAUCCCCAGCAGGCGGCCGCUUCGGCGGCAGCGGCUGCGGCGGCU .......................................((((((((((..((((.((((....................))))(((((....))))))))))))))))))).. ( -45.85) >DroYak_CAF1 20281 114 - 1 ACGUUGAACUCUCUGCUCCAGUCCUCAAAUCCGCCACCCCCGCCGCAGCACCGCUACGCCAACACCUACGAUCCCCAGCAGGCGGCCGCUUCGGCGGCAGCUGCUGCGGCGGCC ...((((.....(((...)))...))))...........(((((((((((..(((.((((....................))))(((((....))))))))))))))))))).. ( -46.35) >consensus ACGUUAAACUCUCUGCUCCAGUCCUCGAAUCCGCCGCCUCCGCCGCAGCAUCGCUACGCCAACACCUACGAUCCCCAGCAGGCGGCCGCUUCGGCGGCAGCGGCUGCGGCGGCU .......................................((((((((((..((((.((((....................))))(((((....))))))))))))))))))).. (-33.31 = -35.19 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:48 2006