Locus 5153

Sequence ID 3R_DroMel_CAF1
Location 13,540,670 – 13,540,788
Length 118
Max. P 0.919380
window8415

overview

Window 5

Location 13,540,670 – 13,540,788
Length 118
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 90.16
Mean single sequence MFE -29.23
Consensus MFE -24.98
Energy contribution -25.98
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.85
SVM decision value 1.13
SVM RNA-class probability 0.919380
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13540670 118 - 27905053
UAUCUCCCUCCCCCAAUCUCCUACCCCACCGCACUCCACACACCCACUGCCCACUCAUUCCAUGGAGAGGGGCUCGUCACGUUUUGUGCACAUGUAUUCGUUUGGGAGUGUGUGUGUA
..........................(((((((((((.((.((.....((((.(((..((....)))))))))..(((((.....))).))........)).)))))))))).))).. ( -33.50)
>DroSec_CAF1 15497 111 - 1
UAUCUCCCUCCCCCAACCUCCUACC-CACCGCACUCCACACACCCACUGCCCACUCAUUCCAUGGAGAGGGGCUCGUCACGUUUUGUGCACAUGUAUUCGUUUGGGAGUGUG------
.........................-...((((((((.((.((.....((((.(((..((....)))))))))..(((((.....))).))........)).))))))))))------ ( -29.10)
>DroSim_CAF1 12447 111 - 1
UAUCUCCCUCCCCCAACCUCCUACC-CACCGCACUCCACACACCCACUGCCCACUCAUUCCAUGGAGAGGGGCUCGUCACGUUUUGUGCACAUGUAUUCGUUUCGGAGUGUG------
.........................-...((((((((...........((((.(((..((....)))))))))..(..(((....((((....)))).)))..)))))))))------ ( -29.30)
>DroYak_CAF1 19332 104 - 1
UAUCUACCUCCCCCAAUCUCCUA----------CUCCACCCACCCACUGCCCACUCAUUCCACGGAGAGGGGCUCGUCACGUUUUGUGCACAUGUAUUCGUUUGGGAGUGUGAC----
....((((((((...........----------...............((((.(((..((....))))))))).....(((....((((....)))).)))..))))).)))..---- ( -25.00)
>consensus
UAUCUCCCUCCCCCAACCUCCUACC_CACCGCACUCCACACACCCACUGCCCACUCAUUCCAUGGAGAGGGGCUCGUCACGUUUUGUGCACAUGUAUUCGUUUGGGAGUGUG______
.............................((((((((...........((((.(((..((....))))))))).....(((....((((....)))).)))...))))))))...... (-24.98 = -25.98 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:45 2006