| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,540,312 – 13,540,418 |
| Length | 106 |
| Max. P | 0.989728 |
| Location | 13,540,312 – 13,540,418 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Mean single sequence MFE | -20.22 |
| Consensus MFE | -20.22 |
| Energy contribution | -20.22 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.38 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13540312 106 + 27905053 AAGUGCCGGUUCUCUGCUGUCCGUCUCCCUCACUCUCACCCGGCUUCGCCCAGUAACAACAACUAAAGCACAACAACACCCGGCACUUAAACAGCGAAUUUUCAAG (((((((((.....(((((..((...((.............))...))..)))))............(.....).....))))))))).................. ( -20.22) >DroSec_CAF1 15148 106 + 1 AAGUGCCGGUUCUCUGCUGUCCGUCUCCCUCACUCUCACCCGGCUUCGCCCAGUAACAACAACUAAAGCACAACAACACCCGGCACUUAAACAGCGAAUUUUCAAG (((((((((.....(((((..((...((.............))...))..)))))............(.....).....))))))))).................. ( -20.22) >DroSim_CAF1 12091 106 + 1 AAGUGCCGGUUCUCUGCUGUCCGUCUCCCUCACUCUCACCCGGCUUCGCCCAGUAACAACAACUAAAGCACAACAACACCCGGCACUUAAACAGCGAAUUUUCAAG (((((((((.....(((((..((...((.............))...))..)))))............(.....).....))))))))).................. ( -20.22) >consensus AAGUGCCGGUUCUCUGCUGUCCGUCUCCCUCACUCUCACCCGGCUUCGCCCAGUAACAACAACUAAAGCACAACAACACCCGGCACUUAAACAGCGAAUUUUCAAG (((((((((.....(((((..((...((.............))...))..)))))............(.....).....))))))))).................. (-20.22 = -20.22 + 0.00)
| Location | 13,540,312 – 13,540,418 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Mean single sequence MFE | -40.30 |
| Consensus MFE | -40.30 |
| Energy contribution | -40.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.25 |
| Structure conservation index | 1.00 |
| SVM decision value | 2.18 |
| SVM RNA-class probability | 0.989728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13540312 106 - 27905053 CUUGAAAAUUCGCUGUUUAAGUGCCGGGUGUUGUUGUGCUUUAGUUGUUGUUACUGGGCGAAGCCGGGUGAGAGUGAGGGAGACGGACAGCAGAGAACCGGCACUU ..................(((((((((...(((((((.(.....(..((.(((((.(((...))).))))).))..).(....)).)))))))....))))))))) ( -40.30) >DroSec_CAF1 15148 106 - 1 CUUGAAAAUUCGCUGUUUAAGUGCCGGGUGUUGUUGUGCUUUAGUUGUUGUUACUGGGCGAAGCCGGGUGAGAGUGAGGGAGACGGACAGCAGAGAACCGGCACUU ..................(((((((((...(((((((.(.....(..((.(((((.(((...))).))))).))..).(....)).)))))))....))))))))) ( -40.30) >DroSim_CAF1 12091 106 - 1 CUUGAAAAUUCGCUGUUUAAGUGCCGGGUGUUGUUGUGCUUUAGUUGUUGUUACUGGGCGAAGCCGGGUGAGAGUGAGGGAGACGGACAGCAGAGAACCGGCACUU ..................(((((((((...(((((((.(.....(..((.(((((.(((...))).))))).))..).(....)).)))))))....))))))))) ( -40.30) >consensus CUUGAAAAUUCGCUGUUUAAGUGCCGGGUGUUGUUGUGCUUUAGUUGUUGUUACUGGGCGAAGCCGGGUGAGAGUGAGGGAGACGGACAGCAGAGAACCGGCACUU ..................(((((((((...(((((((.(.....(..((.(((((.(((...))).))))).))..).(....)).)))))))....))))))))) (-40.30 = -40.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:44 2006