| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,908,615 – 1,908,705 |
| Length | 90 |
| Max. P | 0.509139 |
| Location | 1,908,615 – 1,908,705 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 78.59 |
| Mean single sequence MFE | -22.13 |
| Consensus MFE | -11.76 |
| Energy contribution | -11.57 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.53 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509139 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1908615 90 + 27905053 -ACA-AAGAGAUUG-CCGUGGCACGCAUCUAAAACGAGAUAUGCCACGCCGGAAAUAAGCACC-CAUACAGCAGCCC--------UUACACACACUGGCUCG---------- -...-..((.....-..((((((...((((......)))).))))))(((((......((...-......)).(...--------...).....))))))).---------- ( -18.60) >DroEre_CAF1 69188 90 + 1 -ACA-AAGAGAUUG-CCGUGGCACGCAUCUAAAACGAGAUAUGCCACGCCGGAAAUAAGCGUC-CGUACAGCAGCCC--------UCACUCACACUCUCUCA---------- -...-..(((.(((-((((((((...((((......)))).))))))).((((........))-))....))))..)--------))...............---------- ( -23.00) >DroWil_CAF1 66307 85 + 1 -ACAAAAGAGAUUGGCUGUGGCACGCAUCUAAAACGAGAUACGCCAUGCCGGAAAUAAACGCCGCAUACAGCAGCCA--------AUACACACA------------------ -.........((((((((((((....((((......))))..)))((((.((.........))))))...)))))))--------)).......------------------ ( -23.40) >DroYak_CAF1 73015 90 + 1 -ACA-AAGAGAUUG-CCGUGGCACGCAUCUAAAACGAGAUAUGCCACGCCGGAAAUAAGCGCC-CAUAUAGCACCAC--------UCACUCACACUCUCUCG---------- -...-.((((((((-.(((((((...((((......)))).))))))).)))......((...-......)).....--------..........)))))..---------- ( -19.90) >DroMoj_CAF1 64110 110 + 1 AACA-AAGAGAUUG-CCGUGGCACGCAUCUAAAACGAGAUAUGCCACGCCGGAAAUAAGCGUCGCAUAUAGUAGCCCAAAAAUACUUACGCACACUACAACAGUCUCUUCUA ....-(((((((((-..((((...((............((((((.((((.........)))).))))))((((.........))))...))...))))..)))))))))... ( -27.70) >DroAna_CAF1 55076 86 + 1 -ACA-AAGAGAUUG-CUGUGGCACGCAUCUAAAACGAGAUAUGCCACGCCGGAAAUAAGCGCCCCGUACAGCAGCACAG-----CUUUCGCACA------------------ -...-..(.((..(-(((((((..((((((......)))..)))...)))........((((........)).))))))-----)..)).)...------------------ ( -20.20) >consensus _ACA_AAGAGAUUG_CCGUGGCACGCAUCUAAAACGAGAUAUGCCACGCCGGAAAUAAGCGCC_CAUACAGCAGCCC________UUACACACACU__CUC___________ ................(((((((...((((......)))).)))))))................................................................ (-11.76 = -11.57 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:01 2006