Locus 5146

Sequence ID 3R_DroMel_CAF1
Location 13,533,865 – 13,533,964
Length 99
Max. P 0.652426
window8398

overview

Window 8

Location 13,533,865 – 13,533,964
Length 99
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 78.87
Mean single sequence MFE -40.42
Consensus MFE -19.97
Energy contribution -21.93
Covariance contribution 1.96
Combinations/Pair 1.05
Mean z-score -1.97
Structure conservation index 0.49
SVM decision value 0.25
SVM RNA-class probability 0.652426
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13533865 99 - 27905053
CAACAGCAGGCGGGUCAGCAGCCCGGCGG--------UCCUG---UGCCGGGCGGACCACCUCCAGGUACCGGAC---AGCAGCCGCCGCAACAGAACACACCGCCAACAUCU
.....((.(((((((.....))))(((.(--------(((.(---((((.((.((....)).)).))))).))))---....))))))))....................... ( -39.50)
>DroVir_CAF1 3478 111 - 1
CAACAACAAGCUACACAACAGACAGGU--GUUAGCGCUCCUGGAGCGCCCGGAGCGCCACCACCUGGACCCUCACAACAACAGCAGCAGCAACAAAAUACACCGCCCACUUCU
.........((...........(((((--(...(((((((.((....)).)))))))...))))))................((....)).............))........ ( -29.70)
>DroSec_CAF1 8703 99 - 1
CAACAGCAGGCGGGUCAGCAGCCCGGCGG--------UCCUG---UGCCAGGCGGACCACCUCCAGGUGCCGGAC---AGCAGCCGCCGCAGCAGAACACACCGCCAACAUCU
........(((((.((.((.((.((((.(--------(((.(---..((.((.((....)).)).))..).))))---....))))..)).)).)).....)))))....... ( -41.00)
>DroYak_CAF1 9360 99 - 1
CAACAGCAGGCGGGUCAGCAGCCCGGUGG--------UCCUG---UGCCGGGCGGACCACCUCCAGGUGCCGGAC---AGCAGCCGUCGCAGCAGAACACACCGCCAACAUCU
........(((((.((.((.((.((((.(--------(((.(---..((.((.((....)).)).))..).))))---....))))..)).)).)).....)))))....... ( -40.70)
>DroAna_CAF1 7566 99 - 1
CCACAGCAGGCGGGACAGCAGCCCGGCGG--------CCCUG---UGCCGGGCGGACCACCGCCUGGUGCGGGUC---AGCAGCCGCCCCAGCAGAACACACCGCCAACAUCU
........(((((.....(.((..(((((--------(((((---..((((((((....))))))))..))))..---....))))))...)).)......)))))....... ( -51.20)
>consensus
CAACAGCAGGCGGGUCAGCAGCCCGGCGG________UCCUG___UGCCGGGCGGACCACCUCCAGGUGCCGGAC___AGCAGCCGCCGCAGCAGAACACACCGCCAACAUCU
........(((((....((.(((((((...................)))))))(.(((.......))).).........)).((....))...........)))))....... (-19.97 = -21.93 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:30 2006