Locus 5144

Sequence ID 3R_DroMel_CAF1
Location 13,532,596 – 13,532,709
Length 113
Max. P 0.981251
window8394

overview

Window 4

Location 13,532,596 – 13,532,709
Length 113
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 84.47
Mean single sequence MFE -34.66
Consensus MFE -26.33
Energy contribution -28.64
Covariance contribution 2.31
Combinations/Pair 1.06
Mean z-score -2.66
Structure conservation index 0.76
SVM decision value 1.88
SVM RNA-class probability 0.981251
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13532596 113 - 27905053
CAUACCCCCACACGAGGGUACUCUAGUACUCAUUUUUGGGUUGAGAUUGCUCUGCUCUGGCGGAUUUUCCUGUCCUCCGCCCAGCGCUCUUUAGAUCUUAAUACUUGUGUGGG
......(((((((((((((((....))))).........(((((((((.....((.((((((((...........)))).)))).))......))))))))).)))))))))) ( -43.80)
>DroSec_CAF1 7328 113 - 1
CAUACCCCCACACGAGGGUACUCUAGUACUUAUUUUUGGGUUGAGAUUGCUCUGCUCUGGCGGAUUUUCCUGCCCUCCGCCCAGCGCUCUUCAGAUCUUAAUACUUGUGUGGG
......(((((((((((((((....))))).........(((((((((.....((.((((((((...........)))).)))).))......))))))))).)))))))))) ( -43.80)
>DroEre_CAF1 7237 111 - 1
CAUUCCCCCACACGAGGGUAC--UAGUACUCAUUUUUGGGUUGAGAUUACUCUGCUCCGGCUGUUUUUCCUGCCCUCCGCCCUAAGCUCUUUAGAUCUUAAUAUUUGUGUGGG
......((((((((((((((.--....(((((....))))).((((..((...((....)).)).)))).))))))).....((((.((....)).))))......))))))) ( -32.00)
>DroYak_CAF1 8006 101 - 1
CAU----------GAGGGUAC--UAGUACUCAUUUUUGGGCUGAGAUUACUCUGCUUCGCCUGUUUUUCCUGCCCUCAACCGUACGCUCUUCAGAUCUUAAUGUUUAUGUGGG
..(----------(((((((.--.......((.....((((.(((....))).))))....)).......))))))))......(((....((........)).....))).. ( -19.06)
>consensus
CAUACCCCCACACGAGGGUAC__UAGUACUCAUUUUUGGGUUGAGAUUACUCUGCUCCGGCGGAUUUUCCUGCCCUCCGCCCAACGCUCUUCAGAUCUUAAUACUUGUGUGGG
......(((((((((((((((....))))))........(((((((((.....((...(((((.............)))))....))......)))))))))..))))))))) (-26.33 = -28.64 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:27 2006