Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,529,684 – 13,529,777 |
Length | 93 |
Max. P | 0.500000 |
Location | 13,529,684 – 13,529,777 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 92.25 |
Mean single sequence MFE | -23.61 |
Consensus MFE | -22.47 |
Energy contribution | -22.67 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.04 |
Structure conservation index | 0.95 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13529684 93 + 27905053 CAGUCAACCACUUUGAGUGCUCAGACAAAUGUCCCAUUAAUCGCACACUGGGCUCCAACCGAAAACACACGGCCCAGAGUCGCA---------GCCAGAGCU .(.((((.....)))).)((((.(((....))).........((((.(((((((................))))))).)).)).---------....)))). ( -23.99) >DroSec_CAF1 4394 93 + 1 CAGUCAACCACUUUGAGAGCUCAGACAAAUGUCCCAUGAAUCGCACACUGGGCUCCAACCGAAAACACACGGCCCAGAGUCGCA---------GCCAGAGCU ...((((.....)))).(((((.(((....))).........((((.(((((((................))))))).)).)).---------....))))) ( -24.39) >DroSim_CAF1 4870 93 + 1 CAGUCAACCACUUUGAGAGCUCAGACAAAUGUCCCAUGAAUCGCACACUGGGCUCCAACCGAAAACACACGGCCCAGAGUCGCA---------GCCAGAGCU ...((((.....)))).(((((.(((....))).........((((.(((((((................))))))).)).)).---------....))))) ( -24.39) >DroEre_CAF1 4328 102 + 1 CAGUCAACCACUUUGAGAGCUCAGACAAAUGUCCCAUGAAUCGCACACUGGGCUCCAAACGAGAACACACGGCCCAGAGUCGCAGUCAGCGCCGCCAGAGCU ...((((.....)))).(((((.(((....)))...(((...((((.(((((((................))))))).)).))..))).........))))) ( -25.59) >DroYak_CAF1 4633 102 + 1 CAGUCAACCACUUUGAGAGCUCAGACAAAUGUCCCAUGAAUCGCACACUCGGCUCCAAACGAAAACACACGGCCCAGAGUCGCAAUCAGCGCCGCCAGAGCU ...((((.....)))).(((((.(((....)))........(((.....((((((....((........)).....))))))......)))......))))) ( -19.70) >consensus CAGUCAACCACUUUGAGAGCUCAGACAAAUGUCCCAUGAAUCGCACACUGGGCUCCAACCGAAAACACACGGCCCAGAGUCGCA_________GCCAGAGCU ...((((.....))))..((((.(((....))).........((((.(((((((................))))))).)).))..............)))). (-22.47 = -22.67 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:25 2006