| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,523,348 – 13,523,468 |
| Length | 120 |
| Max. P | 0.886998 |
| Location | 13,523,348 – 13,523,468 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.72 |
| Mean single sequence MFE | -30.79 |
| Consensus MFE | -27.50 |
| Energy contribution | -27.23 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13523348 120 - 27905053 AGCCUGCCCCACCAUCUCAAAACAGCCACUCGAUUUAUAUAGGUUAUAUAUUUAUGUAAAAGAACGUGGCGGAUUCGUCGAGGUAUGCAAGGUGCCGUAGUAACUCCUUUUACUAACUUC .((((((...(((.((........(((((((..(((((((((((.....))))))))))).))..))))).((....)))))))..)).))))....((((((......))))))..... ( -28.20) >DroVir_CAF1 10850 120 - 1 AGCGUGCCCAACCAUUUCAAAACAGCCACUCGAUUUAUAUAGGUUAUAUAUUUAUGUAAAAGAACGUGGCGGAUUCGUCGAGGUAUGCAAGGUGCCGUAGUAACUCCUUUUACUAACUUC .((((((((...............(((((((..(((((((((((.....))))))))))).))..))))).((....))).))))))).........((((((......))))))..... ( -29.80) >DroGri_CAF1 10909 120 - 1 CGCGUGUCCGACCAUCUCAAAACAGCCACUCGAUUUAUAUAGGUUAUAUAUUUAUGUAAAAGAACGUGGCGGAUUCGUCGAGGUAUGCAAGGUGCCGUAGUAACUCCUUUUACUAACUUC .((((..(((((.((((.......(((((((..(((((((((((.....))))))))))).))..)))))))))..)))).)..)))).........((((((......))))))..... ( -31.71) >DroWil_CAF1 14947 120 - 1 GGCAUGCCCGACCAUUUCAAAACAGCCACUCGAUUUAUAUAGGUUAUACAUUUAUGUAAAAGAACGUGGCGGAUUCGUCGAGGUAUGCAAGGUGCCGUAGUAACUCCUUUUACUAACUUC .(((((((((((....((......(((((((..(((((((((((.....))))))))))).))..))))).))...)))).))))))).........((((((......))))))..... ( -35.10) >DroMoj_CAF1 11456 120 - 1 GGCAUGCCCCACCAUCUCAAAACAGCCACUUGAUUUAUAUAGGUUAUAUAUUUAUGUAAAAGAACGUGGCGGAUUCGUCGAGGUAUGCAAGGUGCCGUAGUAACUCCUUUUACUAACUUC (((((....((..(((((......(((((((..(((((((((((.....)))))))))))..)).))))).((....))))))).))....))))).((((((......))))))..... ( -30.40) >DroPer_CAF1 7398 120 - 1 CGCCUGCCCAACCAUCUCAAAACAGCCACUCGAUUUAUAUAGGUUAUAUAUUUAUGUAAAAGAACGUGGCGGAUUCGUCGAGGUAUGCAAGGUGCCGUAGUAACUCCUUUUACUAACUUC (((((((...(((.((........(((((((..(((((((((((.....))))))))))).))..))))).((....)))))))..)).)))))...((((((......))))))..... ( -29.50) >consensus AGCAUGCCCAACCAUCUCAAAACAGCCACUCGAUUUAUAUAGGUUAUAUAUUUAUGUAAAAGAACGUGGCGGAUUCGUCGAGGUAUGCAAGGUGCCGUAGUAACUCCUUUUACUAACUUC .((((((((.((.((((.......(((((((..(((((((((((.....))))))))))).))..)))))))))..)).).))))))).........((((((......))))))..... (-27.50 = -27.23 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:17 2006