| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,519,561 – 13,519,661 |
| Length | 100 |
| Max. P | 0.887758 |
| Location | 13,519,561 – 13,519,661 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 79.19 |
| Mean single sequence MFE | -37.70 |
| Consensus MFE | -24.11 |
| Energy contribution | -25.00 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13519561 100 + 27905053 GAGGACCUCCCGGUGGAGGCUGGCUGUAGGGUCGGCUGCCGUAGGGGCCGUACUGAUUGGCACCAGUUGGAGGACUAUGGA-AGAAUUGGAAAAAACAUAA- .....(((((((((...((((((((....))))))))))))..((.((((.......)))).))....)))))..((((..-..............)))).- ( -31.99) >DroVir_CAF1 7751 97 + 1 GUGGUCCGCCCGGUGGUGCCUGACUGUAGGGUCGAUUUCCAUAGGGACCAUACUGAUUAGCGCCAGCUGGCGGGCUGUGUAAAAAAAAU-----AACAAAUU (..(((((((.(.((((((.((((.(((.((((............)))).))).).))))))))).).)))))))..)...........-----........ ( -36.80) >DroSec_CAF1 4188 100 + 1 GAGGACCUCCUGGUGGAGGCUGGCUGUAGGGUCGGCUGCCGUAGGGCCCGUACUGAUUGGCACCAGUUGGAGGACUGUGGA-AGAAUUGAAAAAAACAUAA- .....(((((.(.(((.((((((((....))))))))((((..((.......))...)))).))).).)))))..((((..-..............)))).- ( -31.49) >DroEre_CAF1 4186 99 + 1 GAGGACCUCCCGGAGGCGGCUGGCUGUAGGGUCGGCUGCCGUAGGGGCCGUACUGAUUGGCACCAGUUGGAGGACUGUGCG-AGAGUUGGA-AAAACAUAA- ...((((((.....(((((((((((....)))))))))))(((.((.((...(..((((....))))..).)).)).))))-)).)))...-.........- ( -38.60) >DroYak_CAF1 3471 100 + 1 GAGGUCCUCCCGGUGGAGGCUGGCUGUAGGGUCUGCUGCCGUAGGGGCCGUACUGAUUGGCACCAGUGGGAGGACUGUGAG-AGAGUUGGAGAAAACAUAA- ..((((((((((.(((..((..((.(((.(((((.(((...)))))))).))).).)..)).))).)))))))))).....-...(((......)))....- ( -42.40) >DroPer_CAF1 4472 99 + 1 GGGGCCCCCCUGGCGGGGGCUGACUGUACGGCCGACUGCCAUAGGGUCCAUACUGAUUGGCACCAGCCGGUGGACUGUAUA--GAAGGGGAGAAACCAAGA- ((..(.((((((((((.(((((......)))))..)))))(((.(((((((......((((....))))))))))).))).--..))))).)...))....- ( -44.90) >consensus GAGGACCUCCCGGUGGAGGCUGGCUGUAGGGUCGGCUGCCGUAGGGGCCGUACUGAUUGGCACCAGUUGGAGGACUGUGGA_AGAAUUGGA_AAAACAUAA_ ..((.(((((.(.(((.((((((((....))))))))((((..((.......))...)))).))).).))))).)).......................... (-24.11 = -25.00 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:13 2006