Locus 5132

Sequence ID 3R_DroMel_CAF1
Location 13,513,831 – 13,513,945
Length 114
Max. P 0.929518
window8374

overview

Window 4

Location 13,513,831 – 13,513,945
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.89
Mean single sequence MFE -19.50
Consensus MFE -14.50
Energy contribution -16.02
Covariance contribution 1.52
Combinations/Pair 1.12
Mean z-score -2.29
Structure conservation index 0.74
SVM decision value 1.20
SVM RNA-class probability 0.929518
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13513831 114 - 27905053
CACAC------AUCCACACCCACACCCAAAAUGCUUGGCGUUAGGAAACCAAUAAACAAUUAAUGCAAAACCAUACAUGGGUGGGUGCACCAAUUUGUAUACUAAACUUUCUCACACAUA
.....------.....(((((((.((....(((....(((((((...............))))))).....)))....)))))))))................................. ( -20.26)
>DroSec_CAF1 2820 113 - 1
-ACAC------ACCCACACCCACACCCAAAAUGCUUGGCGUUAGGAAACCAAUAAACAAUUAAUGCAAAACCAUACAUGGGUGGGUGCACCAAUUUGUAUACUAAACUUUCUCACACAUA
-....------.....(((((((.((....(((....(((((((...............))))))).....)))....)))))))))................................. ( -20.26)
>DroSim_CAF1 3189 119 - 1
-ACACAUCCACACCCACACCCACACCCAAAAUGCUUGGCGUUAGGAAACCAAUAAACAAUUAAUGCAAAACCAUACAUGGGUGGGUGCACCAAUUUGUAUACUAAACUUUCUCACACAUA
-...............(((((((.((....(((....(((((((...............))))))).....)))....)))))))))................................. ( -20.26)
>DroEre_CAF1 3256 113 - 1
-ACAC------AUCCACACCCACACCCAAAAUGCUUGGCGUUAGGAAACCAAUAAACGAAUAAUGCAAAUCCGUAUAUGGGUGGGUGCACCAAUUUGUAUACUAAACUUUCUCACACAUA
-....------.....(((((..(((((..((((...(((((((....)...........))))))......)))).))))))))))................................. ( -20.00)
>DroYak_CAF1 3586 86 - 1
-ACAC------AUCCACACCCACG------------------------CCAAUAAACGAUUAAUGCAAAUCU---UAUGGGUGGGUGCACCAAUUUGUAUACUAAACUUUCUCACACAUA
-....------.....(((((((.------------------------(((.(((..((((......)))))---))))))))))))................................. ( -16.70)
>consensus
_ACAC______AUCCACACCCACACCCAAAAUGCUUGGCGUUAGGAAACCAAUAAACAAUUAAUGCAAAACCAUACAUGGGUGGGUGCACCAAUUUGUAUACUAAACUUUCUCACACAUA
................(((((((..............(((((((...............)))))))....(((....))))))))))................................. (-14.50 = -16.02 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:07 2006