Locus 5131

Sequence ID 3R_DroMel_CAF1
Location 13,502,053 – 13,502,164
Length 111
Max. P 0.822657
window8373

overview

Window 3

Location 13,502,053 – 13,502,164
Length 111
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 71.87
Mean single sequence MFE -54.05
Consensus MFE -25.77
Energy contribution -25.92
Covariance contribution 0.14
Combinations/Pair 1.57
Mean z-score -1.83
Structure conservation index 0.48
SVM decision value 0.69
SVM RNA-class probability 0.822657
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13502053 111 + 27905053
CC---------GCGCUGUUGGCGGCUUGGGUGAGCUGUUGGCUGAGCGCAACGUUGCGAGCCUCUAGGACGGACAAGUUCUGUCGCAGCUCCUGCAACUCGGCGGCGUGGACGCGCUGCA
..---------(((((((..(((((((....)))))))..))..)))))...(((((((((......((((((.....))))))...))))..)))))...(((((((....))))))). ( -52.20)
>DroGri_CAF1 4022 111 + 1
CA---------GCAUGACUGUUCGCCUUGCUGAGCUGCUUGUUGAGGCUGACAUUGCUCGCCUCCAGCGAGACGGUCUGUUGGCGCAACUCCUGCAGCUCGGUGUUGCGGACGCGUGCCA
..---------(((((...((((((..(((((((((((..((((..((..(((((((((((.....))))).)))..)))..)).))))....)))))))))))..)))))).))))).. ( -56.10)
>DroEre_CAF1 2792 111 + 1
CC---------GCGCUGUUGGCGGCUUGGGUGAGCUGUUGGCUGAGCGCCACGUUGCGGGCCUCCAGGACGGACAACUCCUGUCGCAGUUCCUGCAACUCGGCGGCGUGGACGCGCUGCA
..---------(((((((..(((((((....)))))))..))..)))))...((((((((.((.(((((.(.....))))))....))..))))))))...(((((((....))))))). ( -52.70)
>DroYak_CAF1 2791 111 + 1
CC---------GCGCUGUUGGCGGCUUGGGUGAGCUGUUGGCUGAGCGCCACGUUGCGGGCCUCCAGGACGGACAACUCCUGUCGCAGUUCCUGCAACUCGGCGGCGUGGACGCGCUGCA
..---------(((((((..(((((((....)))))))..))..)))))...((((((((.((.(((((.(.....))))))....))..))))))))...(((((((....))))))). ( -52.70)
>DroMoj_CAF1 3698 120 + 1
CAGCCUGUACGGCCUGGCUGUUCGCUUGGCUGAGCUGCUGGGUAAGGCUGGCAUUGGUGGCUUCCAGUUUGGCCGCCUGCUGGCGCAGCUCUUGCAGCUCUGUGUUGCGGACGCGCGCCA
((((((.....(((..((.((((((...)).)))).))..))).))))))(((..(((((((........)))))))))).(((((.(((((.(((((.....)))))))).))))))). ( -62.10)
>DroAna_CAF1 2858 111 + 1
CG---------GCACUGUUGGCCGCCUGGCUGAGCUUCUGGUUGAGCGCCUGGUUAUUGGCCUCCAGGUCCACCGACUGCUGGCGCAGUUCCUGCAACUCCGCAGUGUGGACGCGCUGUA
((---------((.(((..(((((((.(((...((((......))))))).)))....))))..)))((((((.((((((....)))))).((((......)))).))))))..)))).. ( -48.50)
>consensus
CC_________GCGCUGUUGGCCGCUUGGCUGAGCUGCUGGCUGAGCGCCACGUUGCGGGCCUCCAGGACGGACAACUGCUGGCGCAGCUCCUGCAACUCGGCGGCGUGGACGCGCUGCA
...........((((((((((..((......(((((((.....(((.(((........))))))(((((........)))))..)))))))..))...))))))))))............ (-25.77 = -25.92 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:06 2006