| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,501,787 – 13,501,893 |
| Length | 106 |
| Max. P | 0.649170 |
| Location | 13,501,787 – 13,501,893 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.70 |
| Mean single sequence MFE | -26.52 |
| Consensus MFE | -8.98 |
| Energy contribution | -9.37 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13501787 106 + 27905053 ----AGA--GUUCA--U------CUCUAUACUCACAUUAUUUUUCUCCCGCUGCUCCUGGAGCUCCUGUUGCAGAUGUUGCUCCUUAGCCUGCAGCUGCUCGGCCCGCUGUUGAGCCUCC ----.((--((...--.------......))))................(((((....(((((..(((...))).....))))).......))))).(((((((.....))))))).... ( -27.70) >DroVir_CAF1 2984 112 + 1 CAGUUG------UA--UUCGAAGAGCUCAACUUACAUUAUUUUUCUCGCGCUGCUCCUGCAGCUCCUGCUCCAGCUGUCGCUCCUUGGCCUGCAGCUGCUCGGCACGCUGUUGCACCUCC .(((((------..--(((...)))..)))))...............(((((((....)))))...((((.(((((((.(((....)))..)))))))...)))).......))...... ( -30.50) >DroPse_CAF1 2409 106 + 1 ----CUAAGAGUUU--C--------CUCUACUUACAUUAUUCUUCUCGCGCUGUUCCUGCAACUCCUGCAGCAGCUGUUUUUCCCUUGCCACCAGCUGCUCGGCGCGUUGUUGCAGCUCC ----...((((...--.--------))))....................(((((....(((((.((((.((((((((...............))))))))))).).))))).)))))... ( -31.46) >DroEre_CAF1 2528 104 + 1 ----CUU--AUUUA--U--------CUCUACUCACAUUAUUUUUCUCUCGCUGCUCCUGGAGCUCCUGUUGCAGAUUUAUCUCCUUGGCCUGCAGCUGCUCGGCACGCUGCUGCGCAUCC ----...--.....--.--------........................(((((.((.((((...(((...)))......))))..))...)))))(((.((((.....)))).)))... ( -23.80) >DroMoj_CAF1 3451 108 + 1 UAAACUU--AGUUA--UU-----AG---CACUCACAUUAUUCUUCUCGCGCUGCUCCUGCAGCUCCUUCUCCAGCUGGCGCUCCCUAUCCUGCAGCUUCUCGGCGCGCUGUUGCGCCUCC .......--((((.--..-----.(---(..................))(((((....))))).........))))(((((..........(((((..........))))).)))))... ( -23.87) >DroAna_CAF1 2588 110 + 1 -UAACUU--AAUUAAAU-------AUUUAACUCACAUUAUUCUUCUCCCUCUGCUCCUGAAGCUCCUGUUGCAGCUGCUUCUCCUUGGCCUGCAGUUGCUCUGCCCGCUGCUGGACUUCC -......--........-------..................................((((.(((....(((((.(((.......)))..((((.....))))..))))).))))))). ( -21.80) >consensus ____CUU__AGUUA__U________CUCUACUCACAUUAUUCUUCUCGCGCUGCUCCUGCAGCUCCUGCUGCAGCUGUUGCUCCUUGGCCUGCAGCUGCUCGGCACGCUGUUGCACCUCC .................................................((.....(((.(((....))).))).................((((((((...))).))))).))...... ( -8.98 = -9.37 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:05 2006