| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,498,162 – 13,498,262 |
| Length | 100 |
| Max. P | 0.637037 |
| Location | 13,498,162 – 13,498,262 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 80.26 |
| Mean single sequence MFE | -31.02 |
| Consensus MFE | -20.39 |
| Energy contribution | -21.75 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.637037 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13498162 100 - 27905053 --GUUAUCCUUGUCCGACUCCCGGAAAACAUGAUCUAGGGACUUUUUGGAAGGAUGCUGACUCUUUGGUGGUUCUGCCUUUUUCGGAGGCUCCGGAAUGUCC --..((((((..(((((.(((((((........))).))))....)))))))))))..(((..(((((.(.(((((.......))))).).)))))..))). ( -29.10) >DroSec_CAF1 48070 100 - 1 --GUUAUCCUUGUCCGUCUCCCGGAAAACAUUAUCUAGGGACUUCUUGGAAGGGUGCUGAUUCUUUGGUGGUUCUGCCUUUUUCGGAGGCUCUGGAAUGUCC --..........((((.....))))..((((..(((((((.(((((.(((((((.((.((..(......)..)).))))))))))))))))))))))))).. ( -29.40) >DroSim_CAF1 47026 100 - 1 --GUUAUCCUUGUCCGUCUCCCGGAAAACAUUAUCUAGGGACUUCUUGGAAGGGUGCUGAUUCUUUGGUGGUUCUGCCUUUUUCGGAGGCUCUGGAAUGUCC --..........((((.....))))..((((..(((((((.(((((.(((((((.((.((..(......)..)).))))))))))))))))))))))))).. ( -29.40) >DroEre_CAF1 45162 100 - 1 --GUUGUCUUUUUCCGACUCCCGGAAAACAUUAUCUAGGGACUUCUUGGAGGGGUGCUGACUCUUUGGGGGUUCAGCCUUUUUUGGCGGCUCUGGAAUGUCG --........((((((.....))))))((((..(((((((.((..(..((((((.((((((((.....))).)))))))))))..).))))))))))))).. ( -32.90) >DroYak_CAF1 54698 100 - 1 --UUUGUCUUUUUCCGACUCCCGGAACACGUUAUCUAGGGACUUCUUGGAGGGGUGCUGACUCAUAGGUGGGUCAGCCUUUUUCGGAGGCUCUGGGAUGUCG --............(((((((((((........)))((((.(((((.(((((((.(((((((((....))))))))))))))))))))))))))))).)))) ( -40.80) >DroAna_CAF1 48107 87 - 1 UGUUUCUCCUUUUCAACCUCCGAGAA------GUCCAGAGACUUUUUGGAC-----UUGCCGCUCU-GCGGGUCUUCCUUUUUCG---GCUCUGGAAUGUCG ........((((((.......)))))------)(((((((.......((((-----((((......-)))))))).((......)---))))))))...... ( -24.50) >consensus __GUUAUCCUUGUCCGACUCCCGGAAAACAUUAUCUAGGGACUUCUUGGAAGGGUGCUGACUCUUUGGUGGUUCUGCCUUUUUCGGAGGCUCUGGAAUGUCC ............((((.....))))........(((((((.(((((..(((((((...((((.......))))..)))))))..))))))))))))...... (-20.39 = -21.75 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:00 2006