| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,482,851 – 13,482,944 |
| Length | 93 |
| Max. P | 0.840884 |
| Location | 13,482,851 – 13,482,944 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.14 |
| Mean single sequence MFE | -34.90 |
| Consensus MFE | -31.80 |
| Energy contribution | -31.97 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.840884 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13482851 93 + 27905053 ------------CGCCCACAAUGCAU-----G-GGGGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUACGGGGAUCGAUACCCCGCAUCUCCA----A-UUGG---- ------------......((((....-----.-((((((((..((((.(((.(.((((....))))).))).))))......((((.......)))))))))))).----)-))).---- ( -34.30) >DroVir_CAF1 34304 105 + 1 UGAGAAUUGUUUGGCCAGCAACACAU-------GGGGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUACGGGGAUCGAUGCCCCGCAUCUCCA----AGUUGU---- .................(((((...(-------((((((((..((((.(((.(.((((....))))).))).))))......((((.......)))))))))))))----.)))))---- ( -37.30) >DroWil_CAF1 33522 94 + 1 ----------------AAUAAUGCAU-----AUGGGGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUACGGGGAUCGAUGCCCCGCAUCUCCAGAAAA-UCGG---- ----------------..........-----.(((((((((..((((.(((.(.((((....))))).))).))))......((((.......))))))))))))).....-....---- ( -33.80) >DroYak_CAF1 37247 92 + 1 ------------AAUCCACAAUGCAU-----G-G-GGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUACGGGGAUCGAUGCCCCGCAUCUCCA----A-UUGG---- ------------......((((...(-----(-(-((((((..((((.(((.(.((((....))))).))).))))......((((.......)))))))))))))----)-))).---- ( -34.90) >DroAna_CAF1 34142 98 + 1 ------------CGCCU----UGCAUUCGGAA-GGGGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUACGGGGAUCGAUACCCCGCAUCUCCA----A-UUGGAUUG ------------.....----...((((((..-((((((((..((((.(((.(.((((....))))).))).))))......((((.......)))))))))))).----.-)))))).. ( -34.60) >DroPer_CAF1 40450 94 + 1 ------------CGCUGUCGAUGCAU-----GAGGGGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUACGGGGAUCGAUGCCCCGCAUCUCCA----A-UAGG---- ------------.((.......))..-----..((((((((..((((.(((.(.((((....))))).))).))))......((((.......)))))))))))).----.-....---- ( -34.50) >consensus ____________CGCCAACAAUGCAU_____G_GGGGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUACGGGGAUCGAUGCCCCGCAUCUCCA____A_UUGG____ .................................((((((((..((((.(((.(.((((....))))).))).))))......((((.......))))))))))))............... (-31.80 = -31.97 + 0.17)
| Location | 13,482,851 – 13,482,944 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.14 |
| Mean single sequence MFE | -27.78 |
| Consensus MFE | -24.03 |
| Energy contribution | -24.03 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.621551 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13482851 93 - 27905053 ----CCAA-U----UGGAGAUGCGGGGUAUCGAUCCCCGUACCUCUCACAUGCUAAGCGAGCGCUCUACCAUCUGAGCUACAUCCCC-C-----AUGCAUUGUGGGCG------------ ----....-.----.((((.(((((((.......))))))).)))).....(((.....)))((((........)))).......((-(-----((.....)))))..------------ ( -30.60) >DroVir_CAF1 34304 105 - 1 ----ACAACU----UGGAGAUGCGGGGCAUCGAUCCCCGUACCUCUCACAUGCUAAGCGAGCGCUCUACCAUCUGAGCUACAUCCCC-------AUGUGUUGCUGGCCAAACAAUUCUCA ----......----.((((.(((((((.......))))))).))))..........((.(((((((........))))(((((....-------)))))..))).))............. ( -30.60) >DroWil_CAF1 33522 94 - 1 ----CCGA-UUUUCUGGAGAUGCGGGGCAUCGAUCCCCGUACCUCUCACAUGCUAAGCGAGCGCUCUACCAUCUGAGCUACAUCCCCAU-----AUGCAUUAUU---------------- ----....-......((((.(((((((.......))))))).)))).....(((.....)))((((........))))...........-----..........---------------- ( -23.70) >DroYak_CAF1 37247 92 - 1 ----CCAA-U----UGGAGAUGCGGGGCAUCGAUCCCCGUACCUCUCACAUGCUAAGCGAGCGCUCUACCAUCUGAGCUACAUCC-C-C-----AUGCAUUGUGGAUU------------ ----....-.----.((((.(((((((.......))))))).))))(((((((...(.((..((((........))))....)).-)-.-----..))).))))....------------ ( -28.60) >DroAna_CAF1 34142 98 - 1 CAAUCCAA-U----UGGAGAUGCGGGGUAUCGAUCCCCGUACCUCUCACAUGCUAAGCGAGCGCUCUACCAUCUGAGCUACAUCCCC-UUCCGAAUGCA----AGGCG------------ ........-.----.((((.(((((((.......))))))).)))).....(((..(((...((((........))))....((...-....)).))).----.))).------------ ( -26.50) >DroPer_CAF1 40450 94 - 1 ----CCUA-U----UGGAGAUGCGGGGCAUCGAUCCCCGUACCUCUCACAUGCUAAGCGAGCGCUCUACCAUCUGAGCUACAUCCCCUC-----AUGCAUCGACAGCG------------ ----....-(----((..(((((((((.......))))(((...((((.(((.(((((....))).)).))).)))).)))........-----..)))))..)))..------------ ( -26.70) >consensus ____CCAA_U____UGGAGAUGCGGGGCAUCGAUCCCCGUACCUCUCACAUGCUAAGCGAGCGCUCUACCAUCUGAGCUACAUCCCC_C_____AUGCAUUGUGGGCG____________ ...............((((.(((((((.......))))))).)))).....(((.....)))((((........)))).......................................... (-24.03 = -24.03 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:47 2006