| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,476,211 – 13,476,310 |
| Length | 99 |
| Max. P | 0.548579 |
| Location | 13,476,211 – 13,476,310 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 88.94 |
| Mean single sequence MFE | -25.02 |
| Consensus MFE | -21.01 |
| Energy contribution | -21.35 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13476211 99 + 27905053 UUAGGCACCUUAAAAUUAACACAUAAAUUUUCAAGUGGGUGGCCAAUUGCCUGCGGCAGGCUAUCCACGAGAUACUUUUAGUCCUGCCAGUUUUUUUUU ...((((....((((((........))))))...((((((((((...((((...))))))))))))))................))))........... ( -27.20) >DroSec_CAF1 26118 97 + 1 UUGGGCACCUUAAAAUUAACACAUAAAUUUUCAAGUGGGUGCCCAAUUGCCUGCGGCAGGCUAUCUACGAGAUACUUUCAGUCCUGCAAGUUUU--UUU ((((((((((.((((((........)))))).....))))))))))..(((((...))))).......((((.((((.((....)).)))).))--)). ( -27.50) >DroSim_CAF1 25553 97 + 1 UUGGGCACCUUAAAAUUAACACAUAAAUUUUCAAGUGGGUGGCCAAUUGCCUGCGGCAGGCUAUCCACGAGAUACUUUCAGUCCUGUCAGUUUU--UUU ..((((............................((((((((((...((((...))))))))))))))((((...)))).))))..........--... ( -27.50) >DroEre_CAF1 22323 96 + 1 UCGGGCACCUUAAAAUUAACACAUAAAUUUUCAAGUGGGUGGCCAAUUUCCUGCGGCUGGCUAUCCGCGAGAUACUUUUAGUCCUGCCAGUU-U--UGU ..((((.....((((((........))))))...(((((((((((............)))))))))))............))))........-.--... ( -23.20) >DroYak_CAF1 28599 97 + 1 UCGGGCACCUUAAAAUUAACACAUAAAUUUUCAAGUGGGUGGCCAAUUGCCUGCGGCUGGCUAUCCACGAGAUACUUUUAGUCCUGCCAGUUUU--UGU ..((((.....((((((........))))))...(((((((((((...(((...))))))))))))))............))))..........--... ( -27.10) >DroAna_CAF1 28480 90 + 1 UCGGGCACCUUAAAAUUAACACAUAAAUUUUCAAGUGGGUGGCCAACGGCCUGCGGAUAGCCAUUCACGAGAUACUUUUGGUCUU-------UU--CUU ..(((.(((..((((((........))))))...(((((((((...((.....))....)))))))))...........))))))-------..--... ( -17.60) >consensus UCGGGCACCUUAAAAUUAACACAUAAAUUUUCAAGUGGGUGGCCAAUUGCCUGCGGCAGGCUAUCCACGAGAUACUUUUAGUCCUGCCAGUUUU__UUU ..((((.....((((((........))))))...((((((((((...((((...))))))))))))))............))))............... (-21.01 = -21.35 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:43 2006