| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,474,907 – 13,474,999 |
| Length | 92 |
| Max. P | 0.837089 |
| Location | 13,474,907 – 13,474,999 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 91.80 |
| Mean single sequence MFE | -23.55 |
| Consensus MFE | -19.34 |
| Energy contribution | -20.03 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13474907 92 - 27905053 ---GUCCCUUUCUCC---UCAAAAUUUCCUUGUUUGGCAACUUUUGCGGCCAAAAUGGAAUUUUGCGUUUGCCUAACUGGCAAAAAAUU-GCCCAAAUA ---...........(---.(((((((.((...((((((..(....)..))))))..))))))))).)((((((.....)))))).....-......... ( -23.60) >DroSec_CAF1 24819 92 - 1 ---GUCCCUUUCUCC---UCAAAAUUUCCUUGUUUGGCAACUUUUGCGGCCAAAAUGGAAUUUUGCGUUUGCCUAACUGGCAAAAAAUU-GGCCAAGUA ---(((........(---.(((((((.((...((((((..(....)..))))))..))))))))).)((((((.....)))))).....-)))...... ( -24.60) >DroSim_CAF1 24249 92 - 1 ---GUCCCUUUCUCC---UCAAAAUUUCCUUGUUUGGCAACUUUUGCGGCCAAAAUGGAAUUUUGCGUUUGCCUAACUGGCAAAAAAUU-GGCCAAGUA ---(((........(---.(((((((.((...((((((..(....)..))))))..))))))))).)((((((.....)))))).....-)))...... ( -24.60) >DroEre_CAF1 21060 92 - 1 ---GUCCCUUUCUCC---UCAAAAUAUCCUUGUUUGGCAACUUUUGCGGCCAAAAUGGAAUUUUGCGUUUGCCUAACUGGCAAAAAAUU-GGCAAAGUA ---(((........(---.((((((.(((...((((((..(....)..))))))..))))))))).)((((((.....)))))).....-)))...... ( -25.50) >DroYak_CAF1 27292 91 - 1 ---GUCCCUUUCUCC---UCAAAAUAUCCUUGUUUGGCAACUUUUGCGGCAAAAAUGAAAUUUUGCGUUUGCCUAACUGGCAAAAAAUU-GGCCAAGU- ---............---..............((((((..........((((((......)))))).((((((.....)))))).....-.)))))).- ( -20.00) >DroAna_CAF1 27254 99 - 1 GAAGUCUCCUUCUCCGCUUCUAAAUUUCGGUUUUUGGCAACUUUUGCGGCCUAAAUGGAAUUUUGCGUUUGCCUAACUGGCAAAAAAUUUACCCAAGUA ((((....))))..(((....((((((((......(((..(....)..)))....)))))))).)))((((((.....))))))............... ( -23.00) >consensus ___GUCCCUUUCUCC___UCAAAAUUUCCUUGUUUGGCAACUUUUGCGGCCAAAAUGGAAUUUUGCGUUUGCCUAACUGGCAAAAAAUU_GGCCAAGUA ...................(((((((((....((((((..(....)..))))))..)))))))))..((((((.....))))))............... (-19.34 = -20.03 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:42 2006