Locus 5110

Sequence ID 3R_DroMel_CAF1
Location 13,456,482 – 13,456,574
Length 92
Max. P 0.832636
window8332

overview

Window 2

Location 13,456,482 – 13,456,574
Length 92
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 87.99
Mean single sequence MFE -21.83
Consensus MFE -18.22
Energy contribution -18.72
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.22
Structure conservation index 0.83
SVM decision value 0.72
SVM RNA-class probability 0.832636
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13456482 92 - 27905053
GCGCUUUC--GGCAUGCUUUUAAUUUAAUUUGAAAAGUUUUGCAUGCCCAUUUGGUACAUUUAACCCCUUGCCUUGG-GCAACAAAAAAAAAAAA
........--.(((.((((((((......))).)))))..))).((((((...((((............)))).)))-))).............. ( -19.10)
>DroSec_CAF1 7593 84 - 1
GCGCUUUU--GGCAUGCUUUUAAUUUAAUUUGAAAAGUUUUGCAUGCCCAUUUGGUACAUUUAACCCCUUGCCUUGGGGCCACAAA---------
(..((...--(((((((....(((((........)))))..))))))).....))..)......((((.......)))).......--------- ( -21.10)
>DroSim_CAF1 6888 87 - 1
GCGCUUUC--GGCAUGCUUUUAAUUUAAUUUGAAAAGUUUUGCAUGCCCAUUUGGUACAUUUAACCCCUUGCCUUGGGGCCACAAAAAA------
(..((...--(((((((....(((((........)))))..))))))).....))..)......((((.......))))..........------ ( -21.10)
>DroEre_CAF1 3213 86 - 1
GCGCUUUC--GGCAUGCUUUUAAUUUAAUUUGAAAAGUUUUGCAUGCCCAUUUGGUACAUUUAACCCCUUGCCAUGGGGC-AAACACGA------
......((--((((.((((((((......))).)))))..))).(((((...(((((............)))))..))))-)....)))------ ( -21.60)
>DroYak_CAF1 3212 86 - 1
GCGCUUUC--GGCAUGCUUUUAAUUUAAUUUGAAAAGUUUUGCAUGCCCAUUUGGUACAUUUAACCCCUUGCCUUGGGCC-AAGCACAA------
(.((((..--.(((.((((((((......))).)))))..)))..(((((...((((............)))).))))).-)))).)..------ ( -21.00)
>DroPer_CAF1 9775 86 - 1
GCUCUUUCUGGGCAUGCUUUUAAUUUAAUUUGAAAAGUUUUGCAUGCCCAUUUGGCACAUUUAACCCCUUCGCUGGGGCCCAAGCU---------
(((.....(((((((((....(((((........)))))..)))))))))...)))........((((......))))........--------- ( -27.10)
>consensus
GCGCUUUC__GGCAUGCUUUUAAUUUAAUUUGAAAAGUUUUGCAUGCCCAUUUGGUACAUUUAACCCCUUGCCUUGGGGCCAAAAA_AA______
(..((.....(((((((....(((((........)))))..))))))).....))..)......((((.......))))................ (-18.22 = -18.72 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:27 2006