| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,451,253 – 13,451,367 |
| Length | 114 |
| Max. P | 0.864219 |
| Location | 13,451,253 – 13,451,367 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 73.45 |
| Mean single sequence MFE | -31.88 |
| Consensus MFE | -21.77 |
| Energy contribution | -21.86 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.864219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13451253 114 + 27905053 UUUGUAAACUUUCUUCUCUUCA-UCCCA-CAGCAAUGGUCAUGCACUCUCACUGCAGCAUGGCCACAUCGAGGGCGUGGGCAGCACUACCACUGCCGCAGCCCAAGCCAAUCUCUU- ......................-.....-..((..(((((((((............)))))))))......((((.(((((((........))))).))))))..)).........- ( -33.10) >DroPse_CAF1 6248 109 + 1 --AACUAACUUUC----CACCA-UCCAACCAGCAAUGGUCAUGGGUUGUCCGUGCAGCAUGGUCACAUUGAGGGCAUUGGUAGCACCACCACUGCCACGGCCCAGGCGAAUCUCCU- --...........----(.(((-((((((((....))))..)))))((.(((((...))))).))......((((..((((((........))))))..)))).)).)........- ( -33.20) >DroSec_CAF1 2432 114 + 1 GUUGUAAUCUUUCUUCUCUUCA-UCCCA-CAGCAAUGGCCAUGGUCUCUCGCUGCAGCAUGGCCACAUCGAGGGCGUGGGCAGCACUACCACUGCCGCAGCCCAAGCCAAUCUCCU- (((((.................-....)-))))..((((((((.((.......).).))))))))......((((.(((((((........))))).)))))).............- ( -33.70) >DroSim_CAF1 1424 114 + 1 GUUGUAAUCUUUUUUCUCUUCA-UCCCA-CAGCAAUGGCCAUGGUCUCUCGCUGCAGCAUGGCCACAUCGAGGGCAUGGGCAGCACUACCACUGCCGCAGCCCAAGCCAAUCUCUU- (((((.................-....)-))))..((((..(((......(((((..((((.((.......)).))))(((((........))))))))))))).)))).......- ( -33.90) >DroWil_CAF1 993 108 + 1 -----UAAGUUUA----CAAAACUCUUGUCAGGAAUGGUCAUGGCUUAUCGGUUCAGCAUGGUCAUAGGGAACAUUUUGGUGGCACAACUACAUUGGGGGCCAAUGUGAGCCUCUUG -----...(((((----((.........(((((((((..((((.((.(.....).))))))..))).(....).))))))((((.(..(......)..))))).)))))))...... ( -24.80) >DroPer_CAF1 2872 109 + 1 --AACUAACUUUC----CACCA-UCCAACCAGCAAUGGCCAUGGGUUGUCCGUGCAGCAUGGUCACAUUGAGGGCAUUGGUAGCACCACCACUGCCACGGCCCAGGCGAAUCUCCU- --........(((----.....-......((....))(((.(((((((((((((...)))))..........((((.((((......)))).))))))))))))))))))......- ( -32.60) >consensus __UGUAAACUUUC____CAUCA_UCCCA_CAGCAAUGGCCAUGGGCUCUCGCUGCAGCAUGGCCACAUCGAGGGCAUGGGCAGCACUACCACUGCCGCAGCCCAAGCCAAUCUCCU_ ...............................((..((((((((..............))))))))......((((...(((((........)))))...))))..)).......... (-21.77 = -21.86 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:25 2006