Locus 5106

Sequence ID 3R_DroMel_CAF1
Location 13,450,315 – 13,450,411
Length 96
Max. P 0.749471
window8327

overview

Window 7

Location 13,450,315 – 13,450,411
Length 96
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.30
Mean single sequence MFE -31.28
Consensus MFE -18.69
Energy contribution -19.00
Covariance contribution 0.31
Combinations/Pair 1.18
Mean z-score -1.81
Structure conservation index 0.60
SVM decision value 0.47
SVM RNA-class probability 0.749471
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13450315 96 + 27905053
UCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCACUUAUGUUGAACCUGAAAAUUUGGAAACUUCUGUGGUGGG----------------UG--------GUUGGAGG
.((((((.....))))))..(((((((((.((..((....))(((((....(((...((.........)).)))....))))))).----------------))--------))))))). ( -30.20)
>DroSec_CAF1 1453 96 + 1
UCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCACUUGUAUUGAGCCCGAAAAUUUGGAAACUUCUGUGGUGGG----------------UG--------GUUGGAGC
.((((((.....)))))).((((((((((.....(((((((.((((.......)).))))........(....)....)))))...----------------))--------)))))))) ( -33.40)
>DroSim_CAF1 439 104 + 1
UCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCACUUGUGUUCAACCCGAAAAUUUGGAAACUUCUGUGGUGGG----------------UGGGUGCUUGGUUGGAGG
.((((((.....))))))..((((((((((...(.((((..((((((....(((....((((....)))).)))....)))))).)----------------))).)..)))))))))). ( -36.50)
>DroAna_CAF1 447 120 + 1
UCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCGCUUGGAAAUAAAUCGAAAAUUUGGAAAUUUCCAUAGCAACACUCAUAAGAUCUACUAGAAUACUAGAUAAGAUA
((.((((((((((...((((((.................))))))((((((((((...((((....))))..))))))).))).................)))).....)))))).)).. ( -25.03)
>consensus
UCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCACUUGUAUUGAACCCGAAAAUUUGGAAACUUCUGUGGUGGG________________UG________GUUGGAGG
.((((((.....))))))........(((((...((....)).(((((..........((((....))))..........)))))...........................)))))... (-18.69 = -19.00 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:23 2006