Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,445,684 – 13,445,777 |
Length | 93 |
Max. P | 0.992870 |
Location | 13,445,684 – 13,445,777 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 84.00 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -26.60 |
Energy contribution | -26.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.27 |
Structure conservation index | 0.82 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13445684 93 + 27905053 CUCAAUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCGU-----UCUAACUUUUUG-GAACUU--CGU---- .............(((.....(((((((.......)))))))..)))((((((((.......))))))))((-----(((((....)))-))))..--...---- ( -32.20) >DroGri_CAF1 2127 94 + 1 CUCAAUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCAU-----UCGAAUUUUUUGUUUAUUUAUA------ .((..........(((.....(((((((.......)))))))..)))((((((((.......))))))))..-----..))..................------ ( -26.80) >DroWil_CAF1 4722 101 + 1 CUCAAUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCGGCAAUUUCU---UUUUUU-UUACUUUUAGAGUAG .....((.((((((((((.(((((((((.......)))))).)))((((((((((.......))))))))))........---......-.)))))))))).)). ( -36.80) >DroMoj_CAF1 1885 94 + 1 CUCAAUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCAG-----ACCC-UUUUUUUUAUAUUUUUAG----- .........((((((((((((.((((((.......))))))((((..((((((((.......)))))))).)-----))).-......))))))))))))----- ( -33.40) >consensus CUCAAUGGUCUAGGGGUAUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCAG_____UCUA_UUUUUUG_UUACUUUUAG_____ .............(((.....(((((((.......)))))))..)))((((((((.......))))))))................................... (-26.60 = -26.60 + -0.00)
Location | 13,445,684 – 13,445,777 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 84.00 |
Mean single sequence MFE | -26.55 |
Consensus MFE | -22.55 |
Energy contribution | -22.55 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.71 |
Structure conservation index | 0.85 |
SVM decision value | 2.36 |
SVM RNA-class probability | 0.992870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13445684 93 - 27905053 ----ACG--AAGUUC-CAAAAAGUUAGA-----ACGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUACCCCUAGACCAUUGAG ----.((--(.((((-..........))-----))(((.....(((((.......)))))((..((((((.......)))))).))....))).......))).. ( -24.90) >DroGri_CAF1 2127 94 - 1 ------UAUAAAUAAACAAAAAAUUCGA-----AUGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUACCCCUAGACCAUUGAG ------..................((.(-----((((......(((((.......)))))((..((((((.......)))))).))...........))))))). ( -24.30) >DroWil_CAF1 4722 101 - 1 CUACUCUAAAAGUAA-AAAAAA---AGAAAUUGCCGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUACCCCUAGACCAUUGAG ....((((...(((.-......---........(((((.((((.......)))).)))))((..((((((.......)))))).)).)))...))))........ ( -24.30) >DroMoj_CAF1 1885 94 - 1 -----CUAAAAAUAUAAAAAAAA-GGGU-----CUGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUACCCCUAGACCAUUGAG -----..................-.(((-----(((((.....(((((.......)))))((..((((((.......)))))).)).....))))))))...... ( -32.70) >consensus _____CUAAAAAUAA_AAAAAAA_UAGA_____ACGGGCUCAACCGGGAUUUGAACCCGGGACCUCUCGCACCCAAAGCGAGAAUCAUACCCCUAGACCAUUGAG ...................................(((.....(((((.......)))))((..((((((.......)))))).))....)))............ (-22.55 = -22.55 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:18 2006