Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 308,190 – 308,310 |
Length | 120 |
Max. P | 0.998580 |
Location | 308,190 – 308,310 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.25 |
Mean single sequence MFE | -45.42 |
Consensus MFE | -41.42 |
Energy contribution | -41.58 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.08 |
Mean z-score | -2.10 |
Structure conservation index | 0.91 |
SVM decision value | 3.15 |
SVM RNA-class probability | 0.998580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 308190 120 + 27905053 GGCAUCAGCGAGGAUCGCAAGGUGUUUUACUCCACUGACCCGGAUGAGUUCCAGCCGGGGCUGGUCGAGAUCUUUAAGAAGUGCCUGGAGAAAUCGUCUGGAGUAAGAUGCAUUGAUGGG ..((((((((.....)))...((((((((((((.....(((((.((.....)).)))))...((.(((..((((((.(.....).))))))..))).))))))))))))))..))))).. ( -45.20) >DroSec_CAF1 44592 120 + 1 GGCAUCAGCGAGGAUCGCAAGGUGUUUUACUCCACUGACCCGGAUGAGUUCCAGCCGGGGCUGGUCGAGAUCUUUAAGAAGUGCCUGGAGAAAUCGUCUGGAGUAAGAUGCAUCGAUGGG ..((((.(((.....)))...((((((((((((.....(((((.((.....)).)))))...((.(((..((((((.(.....).))))))..))).))))))))))))))...)))).. ( -44.60) >DroSim_CAF1 45439 120 + 1 GGCAUCAGCGAGGAUCGCAGGGUGUUUUACUCCACUGACCCGGAUGAGUUCCAGCCGGGGCUGGUCGAGAUCUUUAAGAAGUGCCUGGAGAAAUCGUCUGGAGUAAGAUGCAUCGAUGGG ..((((.(((.....)))...((((((((((((.....(((((.((.....)).)))))...((.(((..((((((.(.....).))))))..))).))))))))))))))...)))).. ( -44.60) >DroEre_CAF1 47512 120 + 1 GGCAUCAGCGAUGAUCGGAAGGUAUUCUACUCCACUGACCCGGAUGAGUUCCAGCCGGGGCUGGUCGAGAUCUUCAAGAAGUGCCUGGAGAAAUCGGCUGGCGUAAGGUGCAUAGAUGGC (.((((.........(....)((((..(((........(((((.((.....)).)))))((..(((((..((((((.(.....).))))))..)))))..)))))..))))...)))).) ( -44.80) >DroYak_CAF1 47328 120 + 1 GGCAUCAGCGAUGAUCGCAAAGUAUUUUACUCCACUGACCCGGAUGAGUUUCAGCCGGGGCUGGUCGAGAUCUUUAAGAAGUGCCUGGAGAAAUCGGCUGGCGUAAGGUGCAUAGAUGGU ..((((.(((.....)))...(((((((((........(((((.((.....)).)))))((..(((((..((((((.(.....).))))))..)))))..)))))))))))...)))).. ( -47.90) >consensus GGCAUCAGCGAGGAUCGCAAGGUGUUUUACUCCACUGACCCGGAUGAGUUCCAGCCGGGGCUGGUCGAGAUCUUUAAGAAGUGCCUGGAGAAAUCGUCUGGAGUAAGAUGCAUAGAUGGG ..((((.(((.....)))...((((((((((((.....(((((.((.....)).)))))...((.(((..((((((.(.....).))))))..))).))))))))))))))...)))).. (-41.42 = -41.58 + 0.16)
Location | 308,190 – 308,310 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.25 |
Mean single sequence MFE | -34.34 |
Consensus MFE | -30.74 |
Energy contribution | -31.58 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.03 |
Mean z-score | -1.67 |
Structure conservation index | 0.90 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.974828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 308190 120 - 27905053 CCCAUCAAUGCAUCUUACUCCAGACGAUUUCUCCAGGCACUUCUUAAAGAUCUCGACCAGCCCCGGCUGGAACUCAUCCGGGUCAGUGGAGUAAAACACCUUGCGAUCCUCGCUGAUGCC .........(((((((((((((..(((..(((..(((.....)))..)))..))).(((((....))))).((((....))))...))))))))........(((.....))).))))). ( -36.30) >DroSec_CAF1 44592 120 - 1 CCCAUCGAUGCAUCUUACUCCAGACGAUUUCUCCAGGCACUUCUUAAAGAUCUCGACCAGCCCCGGCUGGAACUCAUCCGGGUCAGUGGAGUAAAACACCUUGCGAUCCUCGCUGAUGCC .........(((((((((((((..(((..(((..(((.....)))..)))..))).(((((....))))).((((....))))...))))))))........(((.....))).))))). ( -36.30) >DroSim_CAF1 45439 120 - 1 CCCAUCGAUGCAUCUUACUCCAGACGAUUUCUCCAGGCACUUCUUAAAGAUCUCGACCAGCCCCGGCUGGAACUCAUCCGGGUCAGUGGAGUAAAACACCCUGCGAUCCUCGCUGAUGCC .........(((((((((((((..(((..(((..(((.....)))..)))..))).(((((....))))).((((....))))...))))))))........(((.....))).))))). ( -36.30) >DroEre_CAF1 47512 120 - 1 GCCAUCUAUGCACCUUACGCCAGCCGAUUUCUCCAGGCACUUCUUGAAGAUCUCGACCAGCCCCGGCUGGAACUCAUCCGGGUCAGUGGAGUAGAAUACCUUCCGAUCAUCGCUGAUGCC ..((((...((...........(((..........))).......((.((((..(((((((....)))(((.....))).))))...((((.........)))))))).)))).)))).. ( -30.20) >DroYak_CAF1 47328 120 - 1 ACCAUCUAUGCACCUUACGCCAGCCGAUUUCUCCAGGCACUUCUUAAAGAUCUCGACCAGCCCCGGCUGAAACUCAUCCGGGUCAGUGGAGUAAAAUACUUUGCGAUCAUCGCUGAUGCC ..((((...((...........(((..........)))..........((((.......(.(((((.((.....)).))))).).(..(((((...)))))..)))))...)).)))).. ( -32.60) >consensus CCCAUCGAUGCAUCUUACUCCAGACGAUUUCUCCAGGCACUUCUUAAAGAUCUCGACCAGCCCCGGCUGGAACUCAUCCGGGUCAGUGGAGUAAAACACCUUGCGAUCCUCGCUGAUGCC .........(((((((((((((..(((..(((..(((.....)))..)))..)))....(.(((((.((.....)).))))).)..))))))))........(((.....))).))))). (-30.74 = -31.58 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:24 2006