Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,436,611 – 13,436,705 |
Length | 94 |
Max. P | 0.814072 |
Location | 13,436,611 – 13,436,705 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 64.51 |
Mean single sequence MFE | -28.12 |
Consensus MFE | -8.02 |
Energy contribution | -10.80 |
Covariance contribution | 2.78 |
Combinations/Pair | 1.21 |
Mean z-score | -2.18 |
Structure conservation index | 0.29 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814072 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13436611 94 - 27905053 UGGCUAUGGAGGCGGUGGCUAUGGAGGCAAUGGCUUCUUUGG---AAAGUAAAGA--UGCCAAAUCUU---GCCACCGGGAUAGUUAAGUAC-UUGUGAUUGA (((((((.....(((((((...(((.....((((.((((((.---....))))))--.))))..))).---)))))))..))))))).....-.......... ( -29.30) >DroPse_CAF1 17997 91 - 1 GGGCUACGGCGGCGGUGG------------GGGUUUCUUCGGUUAAACGUAAACCUCUGCUGAGGCUGUGAUCCAUCUGUCUAGUUAAGUGCCUUAUUAUUUG ((..((((((..(((..(------------((((((...((......)).)))))))..)))..))))))..))............................. ( -31.60) >DroSec_CAF1 6224 75 - 1 UGGCU---------------AUGGAGGCAAUGGCUUCUUUGG---AAAGUAAAGA--UGCCAAAUCUU---GCAACCGGAAUAGUUAAGUAC-UUGUGA---- (((((---------------((((..((((((((.((((((.---....))))))--.))))....))---))..))...))))))).....-......---- ( -19.90) >DroEre_CAF1 6304 84 - 1 UGGCUAUGGAGGCGGUGGCUAUGGAGGCAAUGGCUUCUUUGG---AAAGUAAAGA--UGCCAAAUCUU---GCCACCGGAAUAGUAAAGUAC----------- ..(((((.....(((((((...(((.....((((.((((((.---....))))))--.))))..))).---)))))))..))))).......----------- ( -29.20) >DroYak_CAF1 4254 94 - 1 UGGUUAUGGUGGCGGUGGCUAUGGAGGCAAUGGCUUCUUUGG---AAAGUAAAGA--UGCCAGAUCUU---ACCGCCGAAACAGUAAAGUAC-UUGUGAUGGA (.((((..((((((((((((.....)))..((((.((((((.---....))))))--.)))).....)---)))))))..((......))..-)..)))).). ( -27.10) >DroPer_CAF1 11364 91 - 1 GGGCUACGGCGGCGGUGG------------GGGUUUCUUCGGUUAAACGUAAACCUCUGCUGAGGCUGUGAUCCAUCUGUCUAGUUAAGUGCCUUAUUAUUUG ((..((((((..(((..(------------((((((...((......)).)))))))..)))..))))))..))............................. ( -31.60) >consensus UGGCUAUGGAGGCGGUGG__AUGGAGGCAAUGGCUUCUUUGG___AAAGUAAAGA__UGCCAAAUCUU___GCCACCGGAAUAGUUAAGUAC_UUGUGAUU__ .............(((((.....((((...((((.((((((........))))))...))))..))))....))))).......................... ( -8.02 = -10.80 + 2.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:05 2006