Locus 5096

Sequence ID 3R_DroMel_CAF1
Location 13,430,508 – 13,430,605
Length 97
Max. P 0.783815
window8305

overview

Window 5

Location 13,430,508 – 13,430,605
Length 97
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 74.49
Mean single sequence MFE -40.32
Consensus MFE -19.56
Energy contribution -20.44
Covariance contribution 0.88
Combinations/Pair 1.14
Mean z-score -1.88
Structure conservation index 0.49
SVM decision value 0.57
SVM RNA-class probability 0.783815
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13430508 97 - 27905053
GUAACGCCCAAGGAUUACCAGGCGACCAGGAAUCGCAGUGGGCAACCCAACGCC-ACUCGAUGCCAUUGCGCAUGUCAC----------------------CCCACUAGGGCGUGAUCUA
((((((((...((....)).))))....((.((((.(((((.(........)))-))))))).)).))))....(((((----------------------(((....))).)))))... ( -32.30)
>DroPse_CAF1 56556 119 - 1
GUAACGCCCAAGGAUGACCAGGCGAACAGGAUUGUCAGCAGGCAGCCCGUGCCAGAUUCGCUCCCACUGCGCAUGUCACGGAUUGCGGGCGGUCCACUCCGCAAACUAGGGCGU-AUCUA
...((((((..((....))..(((....((((((((.....(((..(((((.((....(((.......)))..)).)))))..))).))))))))....)))......))))))-..... ( -44.50)
>DroSim_CAF1 59054 96 - 1
GUAACGCCCAAGGAUUACCAGGCGACCAGGAAUCGCAGUGGGCAACCCAACGCC-ACUCGAUGCUAUUGCGCAUGUCGC-----------------------CCACUAGGGCGUGAUCUA
...((((((..((....)).((((((.....((((.(((((.(........)))-)))))))((....))....)))))-----------------------).....))))))...... ( -35.70)
>DroYak_CAF1 61859 96 - 1
GUAACGCCCAAGGAUUACCAGGCGACCAGCAACCGCAGUGGGCAACCCACGGCA-GUUCGCUGCCAUUGCGCAUGUCGC-----------------------CCACUAGGGCGUGAUCUA
...((((((..((....)).((((((..((((.....(((((...)))))((((-(....))))).))))....)))))-----------------------).....))))))...... ( -44.60)
>DroPer_CAF1 57417 119 - 1
GUAACGCCCAAGGAUGACCAGGCGAACAGGAUUGUCAGCAGGCAGCCCGUGCCAGAUUCGCUCCCACUGCGCAUGUCACGGAUUGCGGGCGGUCCACUCCGCAAACUAGGGCGU-AUCUA
...((((((..((....))..(((....((((((((.....(((..(((((.((....(((.......)))..)).)))))..))).))))))))....)))......))))))-..... ( -44.50)
>consensus
GUAACGCCCAAGGAUUACCAGGCGACCAGGAAUCGCAGUGGGCAACCCAAGGCA_AUUCGCUGCCAUUGCGCAUGUCAC______________________CCCACUAGGGCGUGAUCUA
...((((((..((....))..(((..(((.....((((((((..............))))))))..))))))....................................))))))...... (-19.56 = -20.44 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:03 2006