Locus 5095

Sequence ID 3R_DroMel_CAF1
Location 13,429,884 – 13,429,990
Length 106
Max. P 0.924339
window8304

overview

Window 4

Location 13,429,884 – 13,429,990
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 94.06
Mean single sequence MFE -35.66
Consensus MFE -30.98
Energy contribution -31.54
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -1.58
Structure conservation index 0.87
SVM decision value 1.16
SVM RNA-class probability 0.924339
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13429884 106 - 27905053
UUGCUGUGAUUUUAUUAUCGUGAACACCACUGUUUGCGGCUGCUGGCAAUUUAGGGGUUGCUCUUGCGGCUGCAUUAAGUGCGCUACUUCUGCUCAAGGUCGCGUC
.....((((((((..............((((...(((((((((.(((((((....)))))))...)))))))))...)))).((.......))..))))))))... ( -35.80)
>DroSec_CAF1 55791 106 - 1
UUCCUGUGAUUUUAUUAUCGUGAACGGCACUGUUUGCGGCUGCUGGCCAUUUAGGGGUUGCUCUUGCGGCUGCAUUAAGUGCGCUACUCCUGCUCAAGGUCGCGUC
.....((((((((.....((....))(((((...(((((((((.(((.(((....))).)))...)))))))))...)))))((.......))..))))))))... ( -37.30)
>DroSim_CAF1 58439 106 - 1
UUCCUGUGAUUUUAUUAUCGUGAACGCCACUGUUUGCGGCUGCUGGCAAUUUAGGGGUUGCUCUUGCGGCUGCAUUAAGUGCGCUACUCCUGCUCAAGGUCGCGUC
..................(((((..((((((...(((((((((.(((((((....)))))))...)))))))))...)))).))....(((.....)))))))).. ( -38.40)
>DroEre_CAF1 56272 106 - 1
UUGCUGUGGUUUUAUUAUCGUGAACGCAACUGUUUAAGGCUGCUGGCAAUUUAGGGGUUGCUCUUGCGGCUGCAUUAAGUGCGCUGCUCCUGCUCAAGGUCGCGCC
((((((..((((((....((....))........))))))..).)))))....(.((((((....)))))).).......((((....(((.....)))..)))). ( -30.00)
>DroYak_CAF1 61047 106 - 1
UUGCUGUGACUUUAUUAUCUUGAACGCAACUGUUUGUGGCUGCUGGCAAUUUAGGGGUUGCUCUUGCGGCUGCAUUAAGUGCGCGACUCCUGCUCAAGGUCGCGUC
.....((((((((............(((.((...((..(((((.(((((((....)))))))...)))))..))...)))))(((.....)))..))))))))... ( -36.80)
>consensus
UUGCUGUGAUUUUAUUAUCGUGAACGCCACUGUUUGCGGCUGCUGGCAAUUUAGGGGUUGCUCUUGCGGCUGCAUUAAGUGCGCUACUCCUGCUCAAGGUCGCGUC
.....((((((((..............((((...(((((((((.(((((((....)))))))...)))))))))...)))).((.......))..))))))))... (-30.98 = -31.54 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:02 2006