| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,429,555 – 13,429,665 |
| Length | 110 |
| Max. P | 0.843173 |
| Location | 13,429,555 – 13,429,665 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.87 |
| Mean single sequence MFE | -34.67 |
| Consensus MFE | -20.56 |
| Energy contribution | -21.68 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13429555 110 + 27905053 ----CACCCCU--UACAUACAAGCAUGUUUACGCUCAUGUGUGUGCGUUCGGCUCACGCACACUGAUUCCAUUAGA----CGCACACAUGGGCAGCUGUGCGUGGAACAUUCCAAAUUAU ----.......--.........(((((((...(((((((((((((.((.((.....)).)).(((((...))))).----)))))))))))))))).)))).((((....))))...... ( -33.10) >DroPse_CAF1 55878 108 + 1 CCCCCAUCUCG--CACACACACACAUGC----CCGCACAUGUGUGCGUAC-GCACACGCACACUAAUUCCAUUAGCCACGCGCACACAUGGGCGACUGUGCGUG-----UCGGAAAUUAU ......((.((--.((((.((((..(((----((....((((((((((..-((....))...(((((...)))))....)))))))))))))))..)))).)))-----)))))...... ( -38.40) >DroSec_CAF1 55470 110 + 1 ----CACCCCU--UACAUACAAGCAUGUUUACGCUCAUGUGUGUGCGUUUGGCUCACGCACACUGAUUCCAUUAGA----CGCACACAUGGGCAGCUGUGCGUGGAACAUUCCAAAUUAU ----.......--.........(((((((...((((((((((((((...(((.(((.......)))..)))...).----)))))))))))))))).)))).((((....))))...... ( -33.50) >DroSim_CAF1 58108 112 + 1 ----CACCCCUUUUACAUACAAGCAUGUUUACGCUCAUGUGUGUGCGUUCUGCUCACGCACACUGAUUCCAUUAGA----CGCGCACAUGGGCAGCUGUGCGUGGAACAUUACAAAUUAU ----......((((((.((((.((..(....)((((((((((((((((.......)))))).(((((...))))).----...)))))))))).)))))).))))))............. ( -33.30) >DroEre_CAF1 55940 110 + 1 ----CACCCCU--UGCAUACAGGCGUGUUUAGCCGCAUGUGUGUGCGUUCGGCGCACGCACACUGAUUCCAUUAGA----CGCACACAUGGGCAGCUGUGCGUUGCACAGUCCAAAUUAU ----(((.(((--.......))).)))....(((.((((((((((((.....)))))((...(((((...))))).----.)))))))))))).(((((((...)))))))......... ( -39.20) >DroYak_CAF1 60719 107 + 1 -----ACACCU--UACAUACAGGCAUGUUUACCCGCAUGGGUGUGCGUUC--CGCACUAUAACUGAUUCCAUUAGC----CGCACACAUGGGCGGCUGUGCGUUGAACAGUCCAAAUUAU -----......--........(((..((.(((((....))))).))((((--(((((......((....))..(((----(((........)))))))))))..)))).)))........ ( -30.50) >consensus ____CACCCCU__UACAUACAAGCAUGUUUACCCGCAUGUGUGUGCGUUCGGCUCACGCACACUGAUUCCAUUAGA____CGCACACAUGGGCAGCUGUGCGUGGAACAUUCCAAAUUAU ..............((.((((.(((((........))))).)))).))......(((((((((((..(((((...............)))))))).))))))))................ (-20.56 = -21.68 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:01 2006