| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,899,998 – 1,900,095 |
| Length | 97 |
| Max. P | 0.644664 |
| Location | 1,899,998 – 1,900,095 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 80.50 |
| Mean single sequence MFE | -31.14 |
| Consensus MFE | -18.66 |
| Energy contribution | -19.19 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1899998 97 - 27905053 U--------AUCCUUUCGCCAGCAUUUUCU-U----GCCGCGUGCGCACAUAAAUUAGCUGCCAGGCUAAGAAAUGGCGGCGGGCAGCAAAGGUUGUCCCAACUCGCAAC .--------.......(((..(((......-)----)).)))((((...........(((((((..........)))))))(((((((....))))))).....)))).. ( -31.40) >DroVir_CAF1 67065 103 - 1 CCUGGCCGUAUCCUUUUGCAAGCAUUUUCUUU----GCGGCAUGCGCACAUAAAUUAGCUGCCAAGCUAAGAAAUGGUUGCGAGCAGCAAAGGUUCACCCGCC---UGGC ((.(((.((...(((((((..(((.......)----)).((.((((..(((...((((((....))))))...)))..)))).)).)))))))...))..)))---.)). ( -32.80) >DroPse_CAF1 45607 96 - 1 U--------AUCCUUU-GCCAGCAUUUUCC-U----GCCGCGUGCGCACAUAAAUUAGCUGCCAAGCUAAGAAAUGUUUGCGGGCAGCAAAGGUUCUCUCGUCCCCCAGU .--------..(((((-((..(((......-)----)).((.((((.((((...((((((....))))))...)))).)))).)).)))))))................. ( -30.80) >DroWil_CAF1 53790 100 - 1 U--------AUCCUUUCGCCAGCAUUUUCU-UUACCGCAUCGUGCGCACAUAAAUUAGCUGCCAAGCUAAGAAAUGUUUGCGGGCAGCAAAGGUUCGCGC-UCUCCUGGU .--------........(((((........-.....((.....))((((((...((((((....))))))...))))..((((((.......))))))))-....))))) ( -25.90) >DroMoj_CAF1 55454 96 - 1 CCAG--------CCUUGGCUAGCAUUUUCUUU----GCGGCAUGCGCACAUAAAUUAGCUGCCAAGCUAAGAAAUGGUUGCGGGCAGCAAAGGUUCACCCGCCG--CGGC ...(--------((.((((........(((((----((.((.((((..(((...((((((....))))))...)))..)))).)).))))))).......))))--.))) ( -35.16) >DroPer_CAF1 46002 96 - 1 U--------AUCCUUU-GCCAGCAUUUUCC-U----GCCGCGUGCGCACAUAAAUUAGCUGCCAAGCUAAGAAAUGUUUGCGGGCAGCAAAGGUUCUCUCGUCCCCCAGU .--------..(((((-((..(((......-)----)).((.((((.((((...((((((....))))))...)))).)))).)).)))))))................. ( -30.80) >consensus U________AUCCUUU_GCCAGCAUUUUCU_U____GCCGCGUGCGCACAUAAAUUAGCUGCCAAGCUAAGAAAUGGUUGCGGGCAGCAAAGGUUCUCCCGUCCCCCAGC ...........(((((.((..((.............)).((.((((..(((...((((((....))))))...)))..)))).)).)))))))................. (-18.66 = -19.19 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:53 2006