Locus 5089

Sequence ID 3R_DroMel_CAF1
Location 13,421,425 – 13,421,545
Length 120
Max. P 0.965347
window8295

overview

Window 5

Location 13,421,425 – 13,421,545
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.94
Mean single sequence MFE -42.18
Consensus MFE -37.91
Energy contribution -38.10
Covariance contribution 0.19
Combinations/Pair 1.12
Mean z-score -2.16
Structure conservation index 0.90
SVM decision value 1.58
SVM RNA-class probability 0.965347
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13421425 120 - 27905053
UGCAUCCACAGGGAGCCGGAAUGGGGAAUUCAGCAACCACGGGGAAACCCACGCUGCACUUUUUGCAGAUGAAGGAACGGCAGAGUUCCUCCGUAACGGGCACAAAUGCUGUAUUUACAA
(((.(((....))).(((..(((((((((((.((..((..(((....))).(((((((.....))))).))..))....)).))))))).))))..)))))).................. ( -43.80)
>DroSec_CAF1 46954 120 - 1
UGCAGCCACAGGGAGCCGGAAUGGGGAAUUCAGCAACCACGGGGAAGCCCACGCUACACUUUCUGCUGAUGAAGGAACGGCAGAGUUCCUCCGUAACGGGCACAAAUGCUGCAUUUACAA
((((((......(..(((..(((((((((((.........(((....)))..(((...(((((.......)))))...))).))))))).))))..))).)......))))))....... ( -43.10)
>DroSim_CAF1 49448 120 - 1
UGCAGCCACAGGGAGCCGGAAUGGGGAACUCAGCAACCACGGGGAAACCCACGCUACACUUUCUGCUGAUGAAGGAACGGCAGAGUUCCUCCGUAACGGGCACAAAUGCUGCAUUUUCAA
((((((......(..(((..(((((((((((.........(((....)))..(((...(((((.......)))))...))).))))))).))))..))).)......))))))....... ( -47.90)
>DroYak_CAF1 51793 120 - 1
UGCAUCCACAAGGAGCUGGAAUGGGGAACUCAGCAACCACGGGGAAGCCCACGCUACACUUUUUGCUGAUGAACGAGCGGCAGAGAUCCUCCGAAACAGGCACAAGGGCUGCAUAUACAA
((((.((.....(..(((...((((((.(((.((......(((....))).((((......((....))......)))))).))).))).)))...))).).....)).))))....... ( -33.90)
>consensus
UGCAGCCACAGGGAGCCGGAAUGGGGAACUCAGCAACCACGGGGAAACCCACGCUACACUUUCUGCUGAUGAAGGAACGGCAGAGUUCCUCCGUAACGGGCACAAAUGCUGCAUUUACAA
((((((......(..(((..(((((((((((.........(((....)))..(((...(((((.......)))))...))).))))))).))))..))).)......))))))....... (-37.91 = -38.10 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:53 2006