| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,414,738 – 13,414,840 |
| Length | 102 |
| Max. P | 0.949590 |
| Location | 13,414,738 – 13,414,840 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 89.15 |
| Mean single sequence MFE | -26.54 |
| Consensus MFE | -24.32 |
| Energy contribution | -24.52 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.949590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13414738 102 + 27905053 CACGCGCCCACGAGCGUGCGAUAAUUAUGUUGUCAUGCAUUUGCGGCACGUGUUGGGCUGGGAACCAAAAGUAUAUUAU-AGUACGAGUAUAUAAAUAUAUAA ..(.((((((...((((((((((((...)))))).(((....)))))))))..))))).).)........(((((((..-.(((....)))...))))))).. ( -28.40) >DroSec_CAF1 40767 88 + 1 CACGCGCCCACGAGCGUGCGAUAAUUAUGUUGUCAUGCAUUUGCGGCACGUGUUGGGCUGGGAACCAAAAGUAUAUUAU-AGU--------------AUAUAG ..(.((((((...((((((((((((...)))))).(((....)))))))))..))))).).)........((((((...-.))--------------)))).. ( -27.60) >DroSim_CAF1 43218 88 + 1 CACGCGCCCACGAGCGUGCGAUAAUUAUGUUGUCAUGCAUUUGCGGCACGUGUUGGGCUGGGAACCAAAAGUAUAUUAU-AGU--------------AUGUAU ..(.((((((...((((((((((((...)))))).(((....)))))))))..))))).).)........((((((...-...--------------)))))) ( -27.00) >DroEre_CAF1 41401 83 + 1 CACGCGCCCACGAGCGUGCGAUAAUUAUGUUGUCAUGCAUUUGCGGCACGUGUUGGGCUGGGAACAAAAAGUAUAUU--------------------AUAUAU ...(((((((...((((((((((((...)))))).(((....)))))))))..)))))((....))....)).....--------------------...... ( -26.30) >DroYak_CAF1 45459 89 + 1 CACGCGCCCACGAGCGUGCGAUAAUUAUGUUGUCAUGCAUUUGCGGCACGUGUUAGGCUGGGAACCAAAAGUAUAUUACGAGU--------------AUAUAU ((((.(((((...((((((((((....))))).)))))...)).))).))))...((.......))....((((((.....))--------------)))).. ( -23.40) >consensus CACGCGCCCACGAGCGUGCGAUAAUUAUGUUGUCAUGCAUUUGCGGCACGUGUUGGGCUGGGAACCAAAAGUAUAUUAU_AGU______________AUAUAU ..(.((((((...((((((((((((...)))))).(((....)))))))))..))))).).)......................................... (-24.32 = -24.52 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:50 2006