| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,414,091 – 13,414,183 |
| Length | 92 |
| Max. P | 0.802614 |
| Location | 13,414,091 – 13,414,183 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.53 |
| Mean single sequence MFE | -23.42 |
| Consensus MFE | -15.07 |
| Energy contribution | -16.18 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.775244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13414091 92 + 27905053 CUGAAAUUUUUAUCCGUGCAGUACGAAUGUCCUGGGCACACGGGCUU-AUGACAUGCAAUUUUAAUGGCAUUUUCCGGAUGCCACACUUUGU----------U .(((((((......((((...)))).(((((.(((((......))))-).)))))..))))))).(((((((.....)))))))........----------. ( -21.40) >DroSec_CAF1 40114 78 + 1 CUGAAAUUUUUAUCCGUGCAGGACGAAUGUCCUG-GCACACGGGCUU-AUGACAUGCAAUUUUAAUGGCAUUUUCCGGAU----------------------- ...........(((((((((((((....))))).-))))..(((...-(((.(((.........))).)))..)))))))----------------------- ( -22.20) >DroSim_CAF1 42552 91 + 1 CUGAAAUUUUUAUCCGUGCAGGACGAAUGUCCUG-GCACACGGGCUU-AUGACAUGCAAUUUUAAUGGCAUUUUCCGGAUGCCACACUUUGU----------U .(((((((.....(((((((((((....))))))-...)))))((..-.......))))))))).(((((((.....)))))))........----------. ( -26.90) >DroEre_CAF1 40756 91 + 1 GUGUAAUUUUUAUCCGUGCAGGACGAAUGUCCUG-GCGCACGGGCUU-AUGACAUGCAAUUUUAAUGGCAUUUUCCGGAUGCCACACUUUGU----------U ((((........((((((((((((....))))).-..)))))))...-..................((((((.....)))))))))).....----------. ( -28.50) >DroYak_CAF1 44811 91 + 1 GUGUAAUUUUUAUCCGUGCAGGACGAAUGUCCUG-GCGCAUGGGCUU-AUGUCAUGCAAUUUUAAUGGCAUUUUCCGGAUGCCACACUUUGU----------U ((((......((((((((((((((....))))).-))))..(((...-(((((((.........)))))))..))))))))..)))).....----------. ( -29.20) >DroAna_CAF1 37193 97 + 1 ---UAAU--UUUUCUGUGUAAUCUCAAUGUUCAA-GCAAACGAGCUUUUUGACAUGCAAUUUUAAUGAAACUUUUCAAAUGUCAUGGUUUUUUUGACUAAAUU ---....--........................(-(((((.(((((...((((((..........((((....)))).)))))).))))).)))).))..... ( -12.30) >consensus CUGAAAUUUUUAUCCGUGCAGGACGAAUGUCCUG_GCACACGGGCUU_AUGACAUGCAAUUUUAAUGGCAUUUUCCGGAUGCCACACUUUGU__________U .............(((((((((((....))))))....)))))((..........))........(((((((.....)))))))................... (-15.07 = -16.18 + 1.11)
| Location | 13,414,091 – 13,414,183 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 78.53 |
| Mean single sequence MFE | -20.67 |
| Consensus MFE | -13.47 |
| Energy contribution | -13.45 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.802614 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13414091 92 - 27905053 A----------ACAAAGUGUGGCAUCCGGAAAAUGCCAUUAAAAUUGCAUGUCAU-AAGCCCGUGUGCCCAGGACAUUCGUACUGCACGGAUAAAAAUUUCAG .----------......((.((((..(((...((((.((....)).))))((...-..)))))..))))))....((((((.....))))))........... ( -17.30) >DroSec_CAF1 40114 78 - 1 -----------------------AUCCGGAAAAUGCCAUUAAAAUUGCAUGUCAU-AAGCCCGUGUGC-CAGGACAUUCGUCCUGCACGGAUAAAAAUUUCAG -----------------------((((((...((((.((....)).)))).))..-........((((-.(((((....)))))))))))))........... ( -20.90) >DroSim_CAF1 42552 91 - 1 A----------ACAAAGUGUGGCAUCCGGAAAAUGCCAUUAAAAUUGCAUGUCAU-AAGCCCGUGUGC-CAGGACAUUCGUCCUGCACGGAUAAAAAUUUCAG .----------.....((((((((..(((...((((.((....)).))))((...-..)))))..)))-)(((((....)))))))))............... ( -24.10) >DroEre_CAF1 40756 91 - 1 A----------ACAAAGUGUGGCAUCCGGAAAAUGCCAUUAAAAUUGCAUGUCAU-AAGCCCGUGCGC-CAGGACAUUCGUCCUGCACGGAUAAAAAUUACAC .----------.....(((((((((.......)))))..................-....((((((..-.(((((....))))))))))).........)))) ( -25.40) >DroYak_CAF1 44811 91 - 1 A----------ACAAAGUGUGGCAUCCGGAAAAUGCCAUUAAAAUUGCAUGACAU-AAGCCCAUGCGC-CAGGACAUUCGUCCUGCACGGAUAAAAAUUACAC .----------.....((((((.(((((..................(((((....-.....)))))((-.(((((....))))))).))))).....)))))) ( -24.30) >DroAna_CAF1 37193 97 - 1 AAUUUAGUCAAAAAAACCAUGACAUUUGAAAAGUUUCAUUAAAAUUGCAUGUCAAAAAGCUCGUUUGC-UUGAACAUUGAGAUUACACAGAAAA--AUUA--- ......((((.........)))).((((...(((((((..........((((....((((......))-))..)))))))))))...))))...--....--- ( -12.00) >consensus A__________ACAAAGUGUGGCAUCCGGAAAAUGCCAUUAAAAUUGCAUGUCAU_AAGCCCGUGUGC_CAGGACAUUCGUCCUGCACGGAUAAAAAUUACAG .......................(((((..................(((((..........)))))...((((((....))))))..)))))........... (-13.47 = -13.45 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:49 2006