Locus 5084

Sequence ID 3R_DroMel_CAF1
Location 13,411,752 – 13,411,852
Length 100
Max. P 0.572126
window8286

overview

Window 6

Location 13,411,752 – 13,411,852
Length 100
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 79.32
Mean single sequence MFE -25.72
Consensus MFE -18.40
Energy contribution -18.82
Covariance contribution 0.42
Combinations/Pair 1.05
Mean z-score -1.11
Structure conservation index 0.72
SVM decision value 0.08
SVM RNA-class probability 0.572126
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13411752 100 - 27905053
GCCGU----CGGG---UUAUUC-----CAACAGGAUCCUUUGACAAAUUGCACUUGUGCGGCGUUUUAAUCACUUAGGCCAGAACGCCUACAUUGGCCCUAUCUAGGCGUCU
(((((----((((---....((-----(....))).)))..))).....((...((((.((((((((..((.....))..))))))))))))...))........))).... ( -29.30)
>DroPse_CAF1 37763 80 - 1
CCCGU--------------------------------CUUUGACAAAUUGCACUUGUGCGGCGUUUUAAUCACUUAGGCAACAACGCCUACAUUGGCCCUAUCUAGGCGUCU
..(((--------------------------------((..((......((...((((.((((((.(((....)))(....)))))))))))...))....)).)))))... ( -17.80)
>DroEre_CAF1 38471 99 - 1
GCCUC----CGGG---CUGUUC-----CAAC-GGAUCCUUUGACAAAUUGCACUUGUGCGGCGUUUUAAUCACUUAGGCCAGAACGCCUACAUUGGCCCUAUCUAGGCGACU
((((.----.(((---((....-----(((.-(....).))).......(((....)))((((((((..((.....))..))))))))......))))).....)))).... ( -27.80)
>DroYak_CAF1 42567 99 - 1
GCCAC----CGGC---UUAUUU-----CAGC-GGAUCCUUUGACAAAUUGCACUUGUGCGGCGUUUUAAUCACUUAGGCCAAAACGCCUACAUUGGCCCUAUCUAGGCGUCU
(((..----..((---(.....-----.)))-((..((..((.......(((....)))((((((((..((.....))..))))))))..))..)).))......))).... ( -26.00)
>DroAna_CAF1 35140 111 - 1
GUCAUACAUAGGGGAAGCAUUCUGCUGGUACA-GGUCCUUUGACAAAUCGCACUUGUGCGGCGUUUUAAUCACUUAGGCUAGAACGCCUACAUUGGCCCUAUCUAGGCGUCU
(((.((.((((((..(((.....))).(((((-((((..((....))..).))))))))(((((((((..(.....)..)))))))))........)))))).))))).... ( -35.60)
>DroPer_CAF1 38577 80 - 1
CCCGU--------------------------------CUUUGACAAAUUGCACUUGUGCGGCGUUUUAAUCACUUAGGCAACAACGCCUACAUUGGCCCUAUCUAGGCGUCU
..(((--------------------------------((..((......((...((((.((((((.(((....)))(....)))))))))))...))....)).)))))... ( -17.80)
>consensus
GCCGU____CGGG____UAUUC_____CAAC__GAUCCUUUGACAAAUUGCACUUGUGCGGCGUUUUAAUCACUUAGGCCAGAACGCCUACAUUGGCCCUAUCUAGGCGUCU
.........................................(((.....((...((((.((((((((..((.....))..))))))))))))...))(((....))).))). (-18.40 = -18.82 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:45 2006