| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,409,609 – 13,409,720 |
| Length | 111 |
| Max. P | 0.576947 |
| Location | 13,409,609 – 13,409,720 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 94.26 |
| Mean single sequence MFE | -25.37 |
| Consensus MFE | -23.39 |
| Energy contribution | -22.87 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.576947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13409609 111 + 27905053 GCACCGGUUCAAUUCUAUUCAAUGCCUGGCAUUCUUUGUGUGUGUAAAGUACCAUUUAAGGGUGAUAAUCGUUCGCCAUUUGAGGGUGCAAAAUGGAAAAAUCAUUGAAAA .................(((((((....((((.(.....).))))...(((((.(((((((((((.......))))).))))))))))).............))))))).. ( -24.60) >DroVir_CAF1 39389 110 + 1 GUACCGGUUCAAUUCCAUUCAAUGCAUGACAUUCUUUGUGUGUGUAAAGUACCAUUUAAGGGUGAUAAUCGUUCUCCAUUUGAGGGUGCAAAAUGGAAAAAUCAUUGA-AA .....((((...(((((((...(((((.((((.....)))))))))..(((((.((((((((.((.......)).)).)))))))))))..))))))).)))).....-.. ( -26.50) >DroPse_CAF1 35832 110 + 1 GUACCAGUUCAAUUCUAUUCAAUGCCUGGCAUUCUUUGUGUGUGUAAAGUACCAUUUAAGGGUGAUAAUCGUUCGCCAUUUGAGGGUGCAAAAUGGAAAAAUCAUUGA-AA .................(((((((....((((.(.....).))))...(((((.(((((((((((.......))))).))))))))))).............))))))-). ( -24.60) >DroGri_CAF1 39397 109 + 1 GUAACAGUUCAAUUCCAUUCAAUGCAUGACAUUCUUUGUGUGUGUAAAGUACCAUUUAAGGGUGAUAAUCGCUCGCUGUUUGAGGGUGCAAAAUGGAA-AAUCAUUGA-AA ....((((....(((((((...(((((.((((.....)))))))))..(((((....((.(((((.......))))).))....)))))..)))))))-....)))).-.. ( -27.50) >DroMoj_CAF1 41340 110 + 1 GCAGCAGUUCAAUUCCAUUCAAUGCAUGACAUUCAUUGUGUGAGUAAAGUACCAUUUAAGGGUGAUAAUCGUUCUCCAUUUGAGGGUGCAAAAUGGAAAAAUCAUUGA-AA .......((((((((((((...(((.(.((((.....)))).))))..(((((.((((((((.((.......)).)).)))))))))))..))))))......)))))-). ( -24.40) >DroPer_CAF1 36634 110 + 1 GUACCAGUUCAAUUCUAUUCAAUGCCUGGCAUUCUUUGUGUGUGUAAAGUACCAUUUAAGGGUGAUAAUCGUUCGCCAUUUGAGGGUGCAAAAUGGAAAAAUCAUUGA-AA .................(((((((....((((.(.....).))))...(((((.(((((((((((.......))))).))))))))))).............))))))-). ( -24.60) >consensus GUACCAGUUCAAUUCCAUUCAAUGCAUGACAUUCUUUGUGUGUGUAAAGUACCAUUUAAGGGUGAUAAUCGUUCGCCAUUUGAGGGUGCAAAAUGGAAAAAUCAUUGA_AA ....((((....(((((((...(((...((((.....))))..)))..(((((.(((((((((((.......))))).)))))))))))..))))))).....)))).... (-23.39 = -22.87 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:40 2006