Locus 5079

Sequence ID 3R_DroMel_CAF1
Location 13,398,013 – 13,398,111
Length 98
Max. P 0.611084
window8279

overview

Window 9

Location 13,398,013 – 13,398,111
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 93.93
Mean single sequence MFE -27.12
Consensus MFE -23.86
Energy contribution -23.92
Covariance contribution 0.06
Combinations/Pair 1.18
Mean z-score -1.32
Structure conservation index 0.88
SVM decision value 0.16
SVM RNA-class probability 0.611084
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13398013 98 + 27905053
UGUCGUUACGGCCGCUGGUCAGCCCGCAAAUGUGGGCAAUUUUUGCUCAUCGCGAUGUCCCUUUUUUUAUGGACUUUAUUUUUUACCAGAUGCGAGUG
......(((.((..(((((..((((((....)))))).....((((.....)))).((((..........))))..........)))))..))..))) ( -26.60)
>DroSec_CAF1 31330 98 + 1
UGUCGUUACGGCCGCUGGUCAGCCCGCAAAUGUGGGCAAUUUUUGCUCAUCGCGAUGUCCCUUUUUUUAUGGACUUUAUUUUUUACCAGUUGCGAGUG
......(((.((.((((((..((((((....)))))).....((((.....)))).((((..........))))..........)))))).))..))) ( -29.00)
>DroSim_CAF1 32173 98 + 1
UGUCGUUACGGCCGCUGGUCAGCCCGCAAAUGUGGGCAAUUUUUGCUCAUCGCGAUGUCCCUUUUUUUAUGGACUUUAUUUUUUACCAGUUGCGAGUG
......(((.((.((((((..((((((....)))))).....((((.....)))).((((..........))))..........)))))).))..))) ( -29.00)
>DroEre_CAF1 32154 97 + 1
UGUCGUUACGGCCGCUGGUCAGCCCGCAAAUGUGGGCAAUUUUUGCUCAUCGCGAAGUCCCUUU-UUUAUGGACUUUACUUUUUACCAGUUGUGAGUG
......(((.((.((((((..((((((....))))))..............(..((((((....-.....))))))..).....)))))).))..))) ( -29.80)
>DroYak_CAF1 35956 97 + 1
UGUCGUUACGGCCGCUGGUCAGCCCGCAAAUGUGGGCAAUUUUUGUUCAUCGCGAAGUACCUUU-UUCAUGGACUUUAUUUUUUACCAGUUGUGAGUG
......(((.((.((((((..((((((....)))))).......((((((...((((......)-)))))))))..........)))))).))..))) ( -27.40)
>DroAna_CAF1 28959 96 + 1
-GUCGUUACGGCCGCUGGUCAGCCCGAAAAUGUGGGCAAUUUUUGCUCAACGCGAUGUUUCUUU-UUUAUGGACUUUAUUUUUUAGCAGUUGCGAUUC
-(((((.((((((...)))).((..(((((((((((((.....))))))..........(((..-.....)))...)))))))..)).)).))))).. ( -20.90)
>consensus
UGUCGUUACGGCCGCUGGUCAGCCCGCAAAUGUGGGCAAUUUUUGCUCAUCGCGAUGUCCCUUU_UUUAUGGACUUUAUUUUUUACCAGUUGCGAGUG
..........((.((((((..((((((....)))))).....((((.....)))).((((..........))))..........)))))).))..... (-23.86 = -23.92 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:38 2006