Locus 5073

Sequence ID 3R_DroMel_CAF1
Location 13,382,031 – 13,382,134
Length 103
Max. P 0.906177
window8272

overview

Window 2

Location 13,382,031 – 13,382,134
Length 103
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 75.18
Mean single sequence MFE -19.46
Consensus MFE -12.10
Energy contribution -13.60
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.62
SVM decision value 1.05
SVM RNA-class probability 0.906177
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13382031 103 + 27905053
CAUCCUAAAGUGGAGUCAAUGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAGAC-CUCCUUCUCAGCCACCCUCUCAUGUCAUCUCCUUUCGCUCA----CA
.....(((((((((((((((....))))..))).)))))))).......(((.....)))-.........................................----.. ( -15.20)
>DroPse_CAF1 16276 95 + 1
AAAACUAAAGUGGAGUCAAUGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAGAGCCGCUUU------------CUCCU-UGGGCCCCUAGCAUGCACAGACA
.....(((((((((((((((....))))..))).)))))))).......(((...(((.(((.(...------------.....-.))))..)))(....)...))). ( -20.20)
>DroGri_CAF1 16615 92 + 1
CCAGCUAAAGUGGAGUCAAUGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAAGG-CUUGUUU-----------UUCUUGUUUGC--CAUU-GC-CACACACA
..(((.((((((((((((((....))))..))).)))))))))).....(.((((...((-(......-----------.........))--))))-).-)....... ( -19.96)
>DroYak_CAF1 20035 85 + 1
CAUCCUAAAGUGGAGUCAAUGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAGAC-CUCCUU----------------------CUCCUUUCACUCACACACA
.....(((((((((((((((....))))..))).)))))))).......(((.....)))-......----------------------................... ( -15.20)
>DroMoj_CAF1 16389 93 + 1
CCAGCUAAAGUGGAGUCAAUGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAAGA-GUUGUUU-----------UUCUUGUUUGC--CUUU-GUGCACACUCG
..(((.((((((((((((((....))))..))).)))))))))).(((((.(((.(((((-(......-----------)))))).))).--...)-))))....... ( -26.00)
>DroPer_CAF1 16833 95 + 1
AAAACUAAAGUGGAGUCAAUGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAGAGCCGCUUU------------CUCCU-UGGGCCCCUAGCAUGCACAGACA
.....(((((((((((((((....))))..))).)))))))).......(((...(((.(((.(...------------.....-.))))..)))(....)...))). ( -20.20)
>consensus
CAAACUAAAGUGGAGUCAAUGAAAAUUGCAACUCCCACUUUGCUCGUACGUCAAUUAGAG_CUCCUU____________CUCCU_UGGGC_CCUUUCACGCACACACA
.....(((((((((((((((....))))..))).)))))))).................................................................. (-12.10 = -13.60 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:32 2006