Locus 5072

Sequence ID 3R_DroMel_CAF1
Location 13,379,162 – 13,379,277
Length 115
Max. P 0.605488
window8271

overview

Window 1

Location 13,379,162 – 13,379,277
Length 115
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 81.03
Mean single sequence MFE -28.70
Consensus MFE -19.49
Energy contribution -19.55
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -1.65
Structure conservation index 0.68
SVM decision value 0.15
SVM RNA-class probability 0.605488
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13379162 115 - 27905053
UUCGCACUGCUUUGUGCGCAAAAUCCCCAAAGGAAUCAGCACGGAGUCCUGGGUGCACUGAGAAAAAGGAGGCACUCUAUAAAGUUAGUUCAAAAAAC-ACAAUA-CAAGUUAAAUA
...((((((((((((((......(((.....)))....)))))))))....)))))(((((......((((...))))......))))).........-......-........... ( -24.00)
>DroSec_CAF1 12672 112 - 1
UUCGCACUGCUUUGUGCGCAAAAUCCCCAAAGGAAUCAGCACGGAGUCCUGGGUGCACUGA---AAACGAGGUACUCUCUAAACUUGGUAAUCAAAAGAAU-AUAAC-AGUUAGAGA
...((((((((((((((......(((.....)))....)))))))))....))))).....---...........(((((((.....(((.((....)).)-))...-..))))))) ( -29.10)
>DroSim_CAF1 13333 117 - 1
UUCGCACUGCUUUGUGCGCAAAAUCCCCAAAGGAAUCAGCACGGAGUCCUGGGUGCACUGAGAAAAACGAGGCACUCUCUAAACUUGGUUAUCAAAUAAACAAUAACAAGUUAGAGA
...((((((((((((((......(((.....)))....)))))))))....)))))...................(((((((.((((.((((..........))))))))))))))) ( -30.40)
>DroEre_CAF1 13398 112 - 1
UUCGCACUGCUUUGUGCGCAAAAUCCCCAAAGGAAUCAGCAUGGAGUCCUG-GUGCACUGAGAGCAAGGAGGCUCU--GCAGUCAUCAUA-GCAUAAAAAA-AGAACACUCAAAAUA
...((...((((..(((......(((.....)))....)))..))))..((-(((.(((((((((......)))))--.)))))))))..-))........-............... ( -31.30)
>consensus
UUCGCACUGCUUUGUGCGCAAAAUCCCCAAAGGAAUCAGCACGGAGUCCUGGGUGCACUGAGAAAAACGAGGCACUCUCUAAACUUGGUAAUCAAAAAAAC_AUAACAAGUUAAAGA
...((((((((((((((......(((.....)))....)))))))))....)))))............................................................. (-19.49 = -19.55 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:31 2006