Locus 5071

Sequence ID 3R_DroMel_CAF1
Location 13,378,848 – 13,378,941
Length 93
Max. P 0.896409
window8270

overview

Window 0

Location 13,378,848 – 13,378,941
Length 93
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 80.69
Mean single sequence MFE -18.89
Consensus MFE -13.95
Energy contribution -14.23
Covariance contribution 0.28
Combinations/Pair 1.21
Mean z-score -2.12
Structure conservation index 0.74
SVM decision value 0.99
SVM RNA-class probability 0.896409
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13378848 93 + 27905053
CAUCAAAACUGCGCGUCAUAAAAUACGCGAAUUGCAUUUGCCAUUUACGAUGUGAUUCUCGUUUUAUCUUUGUUCUUUUUUUGUGUGUGCU---GC
..........(((((.(((((((.(((.((((..((((..........))))..)))).)))................)))))))))))).---.. ( -20.73)
>DroPse_CAF1 13156 81 + 1
CAUCAAAACGGCGCGUCAUAAAAUACGCGAAUUGCAUUUGCCAUUUACGAUGUGAUUCCCGUUUUAUCUUUGUUUUUCCCU---------------
....(((((((.((((........))))((((..((((..........))))..)))))))))))................--------------- ( -19.10)
>DroEre_CAF1 13108 93 + 1
CAUCAAAACUGCGCGUCAUAAAAUACGCGAAUUGCAUUUACCAUUUACGAUGUGAUUCUCGUUUUAUCUUUGUACUUUUUUUGUGUGUGCU---GC
..........(((((.(((((((.(((.((((..((((..........))))..)))).)))................)))))))))))).---.. ( -20.73)
>DroWil_CAF1 22169 95 + 1
CAUCAAAACGACGCGUCAUAAAAUACGCGAAUUGCAUUUACCAUUUACGAUGUGAUUCUC-UUUUCUCUUUGUAGUGUGUAUACAUAUACAUAUUC
.......((((.((((........))))((((..((((..........))))..))))..-........))))(((((((((....))))))))). ( -19.10)
>DroAna_CAF1 11854 93 + 1
CAUCAAAACGACGCAUCAUAAAAUACGCGAAUUGCAUUUGCCAUUUACGAUGUGGUUUCCGUUUUAUCUUUGUUUCACUUAUUUUUUCCCU---GC
....((((((.((((((.((((....((((((...))))))..)))).)))))).....))))))..........................---.. ( -14.60)
>DroPer_CAF1 13656 81 + 1
CAUCAAAACGGCGCGUCAUAAAAUACGCGAAUUGCAUUUGCCAUUUACGAUGUGAUUCCCGUUUUAUCUUUGUUUUUCCCU---------------
....(((((((.((((........))))((((..((((..........))))..)))))))))))................--------------- ( -19.10)
>consensus
CAUCAAAACGGCGCGUCAUAAAAUACGCGAAUUGCAUUUGCCAUUUACGAUGUGAUUCCCGUUUUAUCUUUGUUUUUCUUUU_U_U_U_CU___GC
....(((((((.((((........))))((((..((((..........))))..)))))))))))............................... (-13.95 = -14.23 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:29 2006