Locus 5066

Sequence ID 3R_DroMel_CAF1
Location 13,353,708 – 13,353,807
Length 99
Max. P 0.800049
window8261

overview

Window 1

Location 13,353,708 – 13,353,807
Length 99
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 79.31
Mean single sequence MFE -32.18
Consensus MFE -13.88
Energy contribution -17.00
Covariance contribution 3.12
Combinations/Pair 1.16
Mean z-score -2.22
Structure conservation index 0.43
SVM decision value 0.61
SVM RNA-class probability 0.800049
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13353708 99 + 27905053
GAAUGCCGAAUU---AGGAGGAAACUUUUCGUCUGGCUGAGCUGCAAUGGAAAUGAUAAGAGUCAACAUGCAGAACUCAACU------------UAGGAGUAGAGUUUUCGCAC
....((((.((.---(((((....))))).)).))))...((((((.((....((((....)))).))))))((((((.(((------------....))).))))))..)).. ( -26.00)
>DroSec_CAF1 98479 111 + 1
GAAUGCCGCAUG---AGAAGGAAACUUUUCGACUAGCUGAGCUGCAAUGGAAAUGAUAAGAGUCAACAUGCAGAACUCAGCUUUGGCUGGGUGUUAGGAGUAGAGUUUUCGCAC
...((((.....---.)..(((((((((.(..(((((....(((((.((....((((....)))).))))))).(((((((....))))))))))))..).)))))))))))). ( -35.30)
>DroSim_CAF1 104192 111 + 1
GAAUGCCGCAUG---AGAAGGAAACUUUUCGACUAGCUGAGCUGCAGUGGAAAUGAUAAGAGUCAACAUGCAGCACUCAGCUUAUGCUGGGUGUUAGGAGUAGAGUUUUGGCAC
...((((...((---(((((....))))))).(((((...((((((.((....((((....)))).))))))))(((((((....))))))))))))............)))). ( -42.80)
>DroEre_CAF1 106188 105 + 1
GAGUGCCACAUGUCGAGAGGAAAACUUUUUGACUGGGUGAACUGCAAUGGAAAUGAUAAGAGUCAA---------CUCAGCUUAGCCUGGGAAUUAGUAGUAGAGUUUCCGCAC
..(((((((..(((((((((....)))))))))...))).(((((........((((....)))).---------(((((......))))).....))))).........)))) ( -28.70)
>DroYak_CAF1 116084 114 + 1
AAAUGUCGCGUGACGAGAAGGAAACUUUUCGACUGGGUGAACAGCAAUUGAAAUGAUAAGAGUCAACAUGCUAAACUUAGCUUAGGGUGGGAAUUAGGAGAAGAGUUUUCGCAC
...(((.(((((.(((((((....))))))).(((......))).........((((....)))).))))).((((((..(((..(((....)))..)))..))))))..))). ( -28.10)
>consensus
GAAUGCCGCAUG___AGAAGGAAACUUUUCGACUGGCUGAGCUGCAAUGGAAAUGAUAAGAGUCAACAUGCAGAACUCAGCUUAGGCUGGGAAUUAGGAGUAGAGUUUUCGCAC
...................(((((((((.(..((((.....((((.(((....((((....)))).)))))))..((((((....))))))..))))..).))))))))).... (-13.88 = -17.00 +   3.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:21 2006